Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_F01
(783 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S77554-1|AAB33983.1| 474|Homo sapiens GABAA receptor beta 2 sub... 33 0.88
S77553-1|AAB33982.1| 512|Homo sapiens GABAA receptor beta 2 sub... 33 0.88
S67368-1|AAB29370.1| 474|Homo sapiens gamma-aminobutyric acid A... 33 0.88
BC105639-1|AAI05640.1| 474|Homo sapiens GABRB2 protein protein. 33 0.88
BC099719-1|AAH99719.1| 474|Homo sapiens GABRB2 protein protein. 33 0.88
BC099705-1|AAH99705.1| 474|Homo sapiens GABRB2 protein protein. 33 0.88
Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine r... 31 6.2
X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine ... 31 6.2
U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine r... 31 6.2
BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor, n... 31 6.2
BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor, n... 31 6.2
BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor, n... 31 6.2
AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine ... 31 6.2
BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein. 30 8.2
>S77554-1|AAB33983.1| 474|Homo sapiens GABAA receptor beta 2
subunit protein.
Length = 474
Score = 33.5 bits (73), Expect = 0.88
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +3
Query: 60 YYSCYXFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWNAGXMGL 329
+ + E + Q W DKRLS+N + L
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNL 105
>S77553-1|AAB33982.1| 512|Homo sapiens GABAA receptor beta 2
subunit protein.
Length = 512
Score = 33.5 bits (73), Expect = 0.88
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +3
Query: 60 YYSCYXFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWNAGXMGL 329
+ + E + Q W DKRLS+N + L
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNL 105
>S67368-1|AAB29370.1| 474|Homo sapiens gamma-aminobutyric acid A
receptor beta 2 subunit protein.
Length = 474
Score = 33.5 bits (73), Expect = 0.88
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +3
Query: 60 YYSCYXFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWNAGXMGL 329
+ + E + Q W DKRLS+N + L
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNL 105
>BC105639-1|AAI05640.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 33.5 bits (73), Expect = 0.88
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +3
Query: 60 YYSCYXFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWNAGXMGL 329
+ + E + Q W DKRLS+N + L
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNL 105
>BC099719-1|AAH99719.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 33.5 bits (73), Expect = 0.88
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +3
Query: 60 YYSCYXFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWNAGXMGL 329
+ + E + Q W DKRLS+N + L
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNL 105
>BC099705-1|AAH99705.1| 474|Homo sapiens GABRB2 protein protein.
Length = 474
Score = 33.5 bits (73), Expect = 0.88
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Frame = +3
Query: 60 YYSCYXFLLTCAIASAAECENATSLSLM---IDSLLATYDRESPPD---SKIVVNLTLHL 221
Y+ + F L A A + +++SL+ +D LL YD PD + V + + +
Sbjct: 9 YFGIWSFPLIIAAVCAQSVNDPSNMSLVKETVDRLLKGYDIRLRPDFGGPPVAVGMNIDI 68
Query: 222 RHAN-IRESESTVRILADLQMNWIDKRLSWNAGXMGL 329
+ + E + Q W DKRLS+N + L
Sbjct: 69 ASIDMVSEVNMDYTLTMYFQQAWRDKRLSYNVIPLNL 105
>Y08417-1|CAA69694.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 30.7 bits (66), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLL-NAXXXXXGDYALRARVSNNGSV 450
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>X67513-1|CAA47851.1| 423|Homo sapiens nicotinic acetylcholine
receptor beta-3 subunit protein.
Length = 423
Score = 30.7 bits (66), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLL-NAXXXXXGDYALRARVSNNGSV 450
V SE LW PD+VL NA G + V +NG+V
Sbjct: 70 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 106
>U62438-1|AAB40116.1| 458|Homo sapiens nicotinic acetylcholine
receptor beta3 subunit precursor protein.
Length = 458
Score = 30.7 bits (66), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLL-NAXXXXXGDYALRARVSNNGSV 450
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>BC069788-1|AAH69788.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 30.7 bits (66), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLL-NAXXXXXGDYALRARVSNNGSV 450
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>BC069703-1|AAH69703.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 30.7 bits (66), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLL-NAXXXXXGDYALRARVSNNGSV 450
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>BC069681-1|AAH69681.1| 458|Homo sapiens cholinergic receptor,
nicotinic, beta 3 protein.
Length = 458
Score = 30.7 bits (66), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLL-NAXXXXXGDYALRARVSNNGSV 450
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>AF140765-1|AAD33063.1| 458|Homo sapiens neuronal acetylcholine
receptor beta-3 subunit precursor protein.
Length = 458
Score = 30.7 bits (66), Expect = 6.2
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = +1
Query: 343 VSSERLWRPDVVLL-NAXXXXXGDYALRARVSNNGSV 450
V SE LW PD+VL NA G + V +NG+V
Sbjct: 105 VPSESLWLPDIVLFENADGRFEGSLMTKVIVKSNGTV 141
>BC111802-1|AAI11803.1| 465|Homo sapiens CHRNG protein protein.
Length = 465
Score = 30.3 bits (65), Expect = 8.2
Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 5/82 (6%)
Frame = +3
Query: 81 LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKI--VVNLTLHLRHANI---RES 245
LL A+ A+ N L+ D L+ YD P + VVN++L L N+ E
Sbjct: 11 LLLLAVCLGAQGRNQEE-RLLAD-LMQNYDPNLRPAERDSDVVNVSLKLTLTNLISLNER 68
Query: 246 ESTVRILADLQMNWIDKRLSWN 311
E + ++M W D RL W+
Sbjct: 69 EEALTTNVWIEMQWCDYRLRWD 90
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,219,301
Number of Sequences: 237096
Number of extensions: 1284551
Number of successful extensions: 3105
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 2968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3105
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9534535578
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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