Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_F01
(783 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 41 9e-04
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 39 0.005
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 39 0.005
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 39 0.005
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 39 0.005
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 39 0.005
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 39 0.005
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 36 0.025
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 36 0.043
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 35 0.057
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 33 0.17
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.17
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.17
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 33 0.17
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.17
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 33 0.23
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 32 0.40
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 32 0.40
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 32 0.53
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 31 0.70
Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical pr... 31 0.93
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical pr... 30 2.1
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 30 2.1
X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit... 29 3.7
AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine... 29 3.7
AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine... 29 3.7
AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine... 29 3.7
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 29 5.0
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 29 5.0
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 5.0
Z67737-6|CAA91540.3| 399|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical pr... 28 8.7
Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical pr... 28 8.7
AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine... 28 8.7
AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical ... 28 8.7
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 41.1 bits (92), Expect = 9e-04
Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +3
Query: 45 NVDDLYYSCYXFLLTCAIASAAECENAT-SLSLMIDSLLATYDRESPPDSKIVVNLTLHL 221
N+ + + + F+ T + A E S S + LL +++ SPPD ++ ++ + L
Sbjct: 40 NMQCSFLTIFIFITTVTVGVAEFSEQYQGSSSRLTRHLLEKHNKCSPPDGRVDISHNIEL 99
Query: 222 RHA-NIRESESTVRILADLQMNWIDKRLSWNAGXM-GLQH 335
H I E +++L + W D LSW G++H
Sbjct: 100 VHIIGINELNQNMQVLVYIVQQWTDASLSWKVEEFRGIKH 139
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 XMG 326
G
Sbjct: 130 LFG 132
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 XMG 326
G
Sbjct: 130 LFG 132
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 XMG 326
G
Sbjct: 130 LFG 132
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 XMG 326
G
Sbjct: 130 LFG 132
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 XMG 326
G
Sbjct: 130 LFG 132
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 38.7 bits (86), Expect = 0.005
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 317
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 318 XMG 326
G
Sbjct: 130 LFG 132
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 36.3 bits (80), Expect = 0.025
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 165 YDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 314
YD E+P + L +L+ ++E + + ++ ++ W D RLSWNA
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 35.5 bits (78), Expect = 0.043
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +3
Query: 144 IDSLLATYDRESP----PDSKIVVNLTL---HLRHANIRESESTVRILADLQMNWIDKRL 302
+ + A +D P PD+ N TL +L+ + E E V ++ +L W D RL
Sbjct: 50 VSPVYAWFDTSKPLGYDPDAPQRYNYTLFLYNLKLIQVNEPEEQVSVVLELMEYWYDPRL 109
Query: 303 SWNA 314
SWNA
Sbjct: 110 SWNA 113
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 35.1 bits (77), Expect = 0.057
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Frame = +3
Query: 60 YYSCYXFLLTCAIASAAECENATSL----SLMIDSLLATYDRESPP--DSKIVVNLTLHL 221
+Y+ + +L +IA CEN +L S +++ + YDR P ++VN+T+ L
Sbjct: 44 FYALFSHILFFSIA--LNCENFRTLDNETSAILNDIFVGYDRRVLPFVQGPVLVNMTIVL 101
Query: 222 RHA-NIRESESTVRILADLQMNWIDKRLSWN 311
++E++ + W D RLSW+
Sbjct: 102 GILIELKENQQLAAYVISHTQRWYDGRLSWD 132
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.17
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 207 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 314
L +L+ ++E E V ++ +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +3
Query: 72 YXFLLTCAIASAAECENATSLSLMIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NI 236
+ LL I+ E + D L+ Y+R + P+ + + L L L ++
Sbjct: 7 FLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDV 66
Query: 237 RESESTVRILADLQMNWIDKRLSWN 311
E + + L+ WID++LSW+
Sbjct: 67 HEIDQIMTCSVWLKQTWIDRKLSWD 91
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +3
Query: 72 YXFLLTCAIASAAECENATSLSLMIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NI 236
+ LL I+ E + D L+ Y+R + P+ + + L L L ++
Sbjct: 7 FLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDV 66
Query: 237 RESESTVRILADLQMNWIDKRLSWN 311
E + + L+ WID++LSW+
Sbjct: 67 HEIDQIMTCSVWLKQTWIDRKLSWD 91
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Frame = +3
Query: 72 YXFLLTCAIASAAECENATSLSLMIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NI 236
+ LL I+ E + D L+ Y+R + P+ + + L L L ++
Sbjct: 7 FLLLLLFCISFIKLTEGNEDAKRLYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDV 66
Query: 237 RESESTVRILADLQMNWIDKRLSWN 311
E + + L+ WID++LSW+
Sbjct: 67 HEIDQIMTCSVWLKQTWIDRKLSWD 91
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.5 bits (73), Expect = 0.17
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +3
Query: 141 MIDSLLATYDRESPP--DSK--IVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 305
+I+ L++ Y RE P DS +VV+L + L+ N+ E E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 306 W 308
W
Sbjct: 85 W 85
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 180 PPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXM-GLQHL 338
PP +I + L++ ++ + E E L D + +W D RLSW+ G+ H+
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGGINHI 131
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 198 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 311
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.40
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 198 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 311
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 31.9 bits (69), Expect = 0.53
Identities = 16/79 (20%), Positives = 32/79 (40%)
Frame = +3
Query: 102 SAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQM 281
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 282 NWIDKRLSWNAGXMGLQHL 338
+W D +SW+ GL L
Sbjct: 114 SWNDTMVSWDKEQWGLSWL 132
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 180 PPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 311
PP +++ + + + L+ ++ E E V L D W D+RL WN
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWN 93
>Z66500-2|CAA91304.2| 500|Caenorhabditis elegans Hypothetical
protein T05C12.2 protein.
Length = 500
Score = 31.1 bits (67), Expect = 0.93
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 346 SSERLWRPDVVLLNA-XXXXXGDYALRARVSNNGSV 450
+S +LWRPDV+L N+ Y+ R VS+NG V
Sbjct: 103 ASFKLWRPDVLLFNSVSESFDSTYSSRFIVSSNGDV 138
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Frame = +3
Query: 72 YXFLLTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTLHL-RHANI 236
+ FLL I +S ++++LL Y++ P + V +L R ++
Sbjct: 9 HIFLLVIFILHIVTINANKHVSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDV 68
Query: 237 RESESTVRILADLQMNWIDKRLSWNAGXMG 326
E + L+M W DK+L+WN G
Sbjct: 69 DEVNQVLTTSLWLEMQWYDKKLTWNPTDWG 98
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 207 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 311
L +L+ ++E V ++ +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 165 YDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 314
YD ++P + L L+ + E V ++ ++ W D RLSWNA
Sbjct: 64 YDPDAPKRYNYSIML-YSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>Z99281-1|CAB16504.2| 439|Caenorhabditis elegans Hypothetical
protein Y57G11C.2 protein.
Length = 439
Score = 29.9 bits (64), Expect = 2.1
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Frame = +3
Query: 72 YXFLLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSK----IVVNLTLHLRHA-NI 236
+ F L + + E + T + D L+ YD P + +++N++++ +
Sbjct: 8 FVFYLAISWCNLLEVDGITVAEQLKDVLMEGYDSSIRPVNNERDILIINISMNTMSVLTL 67
Query: 237 RESESTVRILADLQMNWIDKRLSWN 311
+E T+ ++ + W D+ L WN
Sbjct: 68 DPAEETINFSSEFILQWKDEFLFWN 92
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 29.9 bits (64), Expect = 2.1
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 231 NIRESESTVRILADLQMNWIDKRLSWNA---GXMGLQHLAG 344
++ E + + + L +W+D RLSWN G + L H G
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPG 84
>X83887-1|CAA58764.1| 498|Caenorhabditis elegans alpha-1 subunit of
nicotinic acetylcholinereceptor protein.
Length = 498
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 81 LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-----NIRES 245
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 246 ESTVRILADLQMNWIDKRLSWNAGXMG 326
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AY523511-1|AAR98633.1| 498|Caenorhabditis elegans acetylcholine
receptor (57.1 kD)alternative variant 1 protein.
Length = 498
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 81 LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-----NIRES 245
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 246 ESTVRILADLQMNWIDKRLSWNAGXMG 326
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AF022973-7|AAN84815.1| 480|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform b protein.
Length = 480
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 81 LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-----NIRES 245
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 246 ESTVRILADLQMNWIDKRLSWNAGXMG 326
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>AF022973-6|AAC25796.1| 498|Caenorhabditis elegans Acetylcholine
receptor protein16, isoform a protein.
Length = 498
Score = 29.1 bits (62), Expect = 3.7
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 5/87 (5%)
Frame = +3
Query: 81 LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-----NIRES 245
L++CAI +A + L D L+ Y+ P + +T+HL+ A ++ E
Sbjct: 7 LISCAILAAPTLGSLQERRLYED-LMRNYNNLERPVANHSEPVTVHLKVALQQIIDVDEK 65
Query: 246 ESTVRILADLQMNWIDKRLSWNAGXMG 326
V + A L W D L W+ G
Sbjct: 66 NQVVYVNAWLDYTWNDYNLVWDKAEYG 92
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 117 ENATSLS-LMIDSLLATYDRESPPDSKIVVNLT-LHLRHANIRESESTVRILADLQMNWI 290
E+A L+ L I +A+ + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 291 DKRLSWN 311
D RL WN
Sbjct: 93 DDRLMWN 99
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 28.7 bits (61), Expect = 5.0
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 111 ECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRE-SESTVRILADLQMN- 284
E + +L +ID+LL YD P+++ VN+T+ L + SE T D+ +
Sbjct: 9 EFNSRINLGKLIDTLLTDYDTHLLPEAE-GVNVTIELHVQGVSGISEITGDFSLDVMYSE 67
Query: 285 -WIDKRLSW 308
W D RLS+
Sbjct: 68 IWQDPRLSF 76
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.0
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 213 LHLRHAN-IRESESTVRILADLQMNWIDKRLSWN 311
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>Z67737-6|CAA91540.3| 399|Caenorhabditis elegans Hypothetical
protein T01H10.7 protein.
Length = 399
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 165 YDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGXMG 326
Y+ +P V+L +L+ + E E V ++ ++ W D R++W++ G
Sbjct: 64 YNPLAPKRFNYTVSL-YYLKLVEVIEPEEKVSVVLEMAEYWYDPRIAWDSSLYG 116
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 28.3 bits (60), Expect = 6.6
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 207 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 311
L L+ + E + V ++ ++ W D RL+WN
Sbjct: 78 LLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWN 112
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 201 VNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLSWNA 314
VN+ L + H + E E T + + WID+ + W+A
Sbjct: 54 VNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDA 92
>Z81071-1|CAB03014.2| 510|Caenorhabditis elegans Hypothetical
protein F28F8.1 protein.
Length = 510
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Frame = +3
Query: 57 LYYSCYXFL---LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTL 215
L Y C+ L L+ A T + + + L Y +E P + V +
Sbjct: 2 LIYPCFLILWQILSSHRVHATSHPARTPMRNLYEHLFLDYVKEIRPVRNESESLKVEIKF 61
Query: 216 HLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGXMG 326
L+ + E + V I L++ WID+ L+W+ G
Sbjct: 62 WLKQILKVDERDQIVNIYCWLELYWIDETLTWDPKKFG 99
>Z70266-4|CAA94206.3| 534|Caenorhabditis elegans Hypothetical
protein C40C9.2 protein.
Length = 534
Score = 27.9 bits (59), Expect = 8.7
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +3
Query: 69 CYXF-LLTCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRE 242
C F LLT +SA E L D S P +VV++ ++L+ ++ E
Sbjct: 13 CVLFHLLTEVHSSADEYRLLADLRHNYDPYERPVANASEP---LVVSVKIYLQQILDVDE 69
Query: 243 SESTVRILADLQMNWIDKRLSWNAGXMG 326
+ ++A ++ W D +L W+ G
Sbjct: 70 KNQVITLVAWIEYQWTDYKLKWDPSEYG 97
>AY523513-1|AAR98635.1| 510|Caenorhabditis elegans acetylcholine
receptor, one ofnine alpha a7-like nicotinic
acetylcholine receptor subunits(58.6 kD) (acr-18)
protein.
Length = 510
Score = 27.9 bits (59), Expect = 8.7
Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 8/98 (8%)
Frame = +3
Query: 57 LYYSCYXFL---LTCAIASAAECENATSLSLMIDSLLATYDRESPP----DSKIVVNLTL 215
L Y C+ L L+ A T + + + L Y +E P + V +
Sbjct: 2 LIYPCFLILWQILSSHRVHATSHPARTPMRNLYEHLFLDYVKEIRPVRNESESLKVEIKF 61
Query: 216 HLRHA-NIRESESTVRILADLQMNWIDKRLSWNAGXMG 326
L+ + E + V I L++ WID+ L+W+ G
Sbjct: 62 WLKQILKVDERDQIVNIYCWLELYWIDETLTWDPKKFG 99
>AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical
protein C04C3.2 protein.
Length = 464
Score = 27.9 bits (59), Expect = 8.7
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +3
Query: 141 MIDSLLATYDRESPPDSK----IVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKRLS 305
+I+++ YD+ P ++ ++V++T+ L +RE++ + W D +L+
Sbjct: 44 LIETIQRRYDKRVRPFAESNRPVIVHMTIVLGILTEVRENQQVASFVISHVQKWRDPKLA 103
Query: 306 WN 311
WN
Sbjct: 104 WN 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,828,375
Number of Sequences: 27780
Number of extensions: 185998
Number of successful extensions: 653
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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