Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_E15
         (842 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    31   0.013
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    29   0.071
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    28   0.094
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    25   0.87 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   8.1  

>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 31.1 bits (67), Expect = 0.013
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 17  TLMIPHTGXHPL-CEFCEKRFMDPDELYRHLR---KEHLY-CHLCDA 142
           T M  HTG  P  C  C+++F+    L RHLR    E  Y C LC A
Sbjct: 27  THMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVHTGERPYACELCAA 73



 Score = 25.0 bits (52), Expect = 0.87
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
 Frame = +2

Query: 32  HTGXHPL-CEFCEKRFMDPDELYRHLRKEHLYCHLCDADGKNFYYASH 172
           HTG  P  C  C KRF          R  HL  H+    G+  Y+ SH
Sbjct: 4   HTGEKPFECPECHKRFT---------RDHHLKTHMRLHTGEKPYHCSH 42


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 28.7 bits (61), Expect = 0.071
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +2

Query: 32  HTGXHPL-CEFCEKRFMDPDELYRHLR-KEHLYCHLCDADGKNFYYASHSA--LAQHFRK 199
           HT   P  C+ CE+ F    +L+RH+R       H C    K F  +      +  H  +
Sbjct: 142 HTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVCSKTFIQSGQLVIHMRTHTGE 201

Query: 200 DHYLCE 217
             Y+C+
Sbjct: 202 KPYVCK 207



 Score = 26.6 bits (56), Expect = 0.29
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = +2

Query: 53  CEFCEKRFMDPDELYRHLRKE-HLYCHLCDADGKNFYYASHSALAQ--HFRKDHYLCEEG 223
           C  C K F  P  L RH R       + C+   K+F    + ++ +  H ++  Y C+  
Sbjct: 94  CNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVC 153

Query: 224 ECAGQHLAAVFR 259
           E A +H   + R
Sbjct: 154 ERAFEHSGKLHR 165


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 28.3 bits (60), Expect = 0.094
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
 Frame = +2

Query: 53  CEFCEKRFMDPDELYRHLRKEHL--YCHLC 136
           C++CEK ++    L  H+R   L   CHLC
Sbjct: 19  CKYCEKVYVSLGALKMHIRTHTLPCKCHLC 48


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 25.0 bits (52), Expect = 0.87
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 50  LCEFCEKRFMDPDELYRHLRKEH 118
           +CEFC +R+   + L  H   +H
Sbjct: 37  VCEFCNRRYRTKNSLTTHKSLQH 59



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
 Frame = +2

Query: 53  CEFCEKRFMDPDELYRHLRKEH-----LY-CHLCDADGKNFYYASHSALAQHFRKDH 205
           C +C + F     L RH + +H     LY C  C     N  Y + ++L  H    H
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFC-----NRRYRTKNSLTTHKSLQH 59


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 248  QLNVVRHTRPLHISSDPCGNVEQVRSVKHNR 156
            +L + RH     +    CGN  Q+    HN+
Sbjct: 1450 ELQLSRHATSHELKGLLCGNTYQLYLTSHNK 1480


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = -1

Query: 248  QLNVVRHTRPLHISSDPCGNVEQVRSVKHNR 156
            +L + RH     +    CGN  Q+    HN+
Sbjct: 1446 ELQLSRHATSHELKGLLCGNTYQLYLTSHNK 1476


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 166 FTLRTCSTFPQGSLLM*RGRVCRTTFS 246
           FT R CS FP  +L       C+ TFS
Sbjct: 92  FTTRDCSLFPGNAL------SCKETFS 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,461
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27067071
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)