Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_E14
(869 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 36 5e-04
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 31 0.010
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 28 0.13
DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholi... 27 0.30
AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic ac... 25 0.91
AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic ac... 25 0.91
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 24 2.1
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 24 2.1
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 24 2.1
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.7
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.7
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.7
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.7
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.7
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.7
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 23 3.7
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.7
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.7
DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholi... 23 4.8
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 35.9 bits (79), Expect = 5e-04
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +2
Query: 113 CENATSLSLMIDS---LLATYDRDSPPDSKIV--VNLTLHLRHANIRESESTVRIQTDLQ 277
C++ TS S + L YDRD P+ K ++ L ++H N+ E TV L+
Sbjct: 28 CKDITSTSALYRLKLYLFCDYDRDIIPEQKNATKIDFGLSIQHYNVDEYSHTVDFHVMLK 87
Query: 278 MNWIDKRLSW 307
+ W L+W
Sbjct: 88 LMWEQSHLTW 97
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 31.5 bits (68), Expect = 0.010
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Frame = +2
Query: 119 NATSLSLMIDSLLATYDRDSPPD---SKIVVNLTLHLRHAN-IRESESTVRIQTDLQMNW 286
N +++S ++D+LL YD PD V + + +R I E + T + + +W
Sbjct: 2 NHSNISELLDNLLRGYDNSVRPDFGGPPATVEVDIMVRSMGPISEVDMTYSMDCYFRQSW 61
Query: 287 IDKRLSW 307
+D+RL++
Sbjct: 62 VDRRLAF 68
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 27.9 bits (59), Expect = 0.13
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +2
Query: 140 MIDSLLATYDRDSPP------DSKIVVNLTLHLRH-ANIRESESTVRIQTDLQMNWIDKR 298
++D++L YD P D +V + L +R A I + + +Q + W+D+R
Sbjct: 35 VLDNILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQLTFREQWLDER 94
Query: 299 LSWN 310
L +N
Sbjct: 95 LRFN 98
>DQ026031-1|AAY87890.1| 601|Apis mellifera nicotinic acetylcholine
receptor alpha1subunit protein.
Length = 601
Score = 26.6 bits (56), Expect = 0.30
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +3
Query: 324 GCXTWLVSSEXLWXPDVVLLN 386
G T V SE +W PD+VL N
Sbjct: 91 GVDTLHVPSEHIWLPDIVLYN 111
>AY540846-1|AAS48080.1| 541|Apis mellifera neuronal nicotinic
acetylcholine receptorApisa2 subunit protein.
Length = 541
Score = 25.0 bits (52), Expect = 0.91
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 342 VSSEXLWXPDVVLLN 386
V SE +W PD+VL N
Sbjct: 97 VPSEHIWLPDIVLYN 111
>AF514804-1|AAM51823.1| 537|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha-3 protein.
Length = 537
Score = 25.0 bits (52), Expect = 0.91
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 342 VSSEXLWXPDVVLLN 386
V SE +W PD+VL N
Sbjct: 110 VPSENIWLPDIVLYN 124
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 2.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 342 VSSEXLWXPDVVLLN 386
V S+ +W PD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 318 PPAFQLSRLSIQFI*RSVCIRTVDSDSRML 229
PPAF SR + +C+R + ++ML
Sbjct: 472 PPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 23.8 bits (49), Expect = 2.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 342 VSSEXLWXPDVVLLN 386
V S+ +W PD+VL N
Sbjct: 105 VPSDHIWRPDIVLYN 119
Score = 23.4 bits (48), Expect = 2.8
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -3
Query: 318 PPAFQLSRLSIQFI*RSVCIRTVDSDSRML 229
PPAF SR + +C+R + ++ML
Sbjct: 472 PPAFSHSRCPPEIHKSCICVRFIAEHTKML 501
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 23.8 bits (49), Expect = 2.1
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +3
Query: 342 VSSEXLWXPDVVLLN 386
V S+ +W PD+VL N
Sbjct: 101 VPSDHIWRPDIVLYN 115
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Frame = +2
Query: 230 NIRESESTVRIQTDLQMNWIDKRLSWN 310
++ E + L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Frame = +2
Query: 230 NIRESESTVRIQTDLQMNWIDKRLSWN 310
++ E + L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Frame = +2
Query: 230 NIRESESTVRIQTDLQMNWIDKRLSWN 310
++ E + L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Frame = +2
Query: 230 NIRESESTVRIQTDLQMNWIDKRLSWN 310
++ E + L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Frame = +2
Query: 230 NIRESESTVRIQTDLQMNWIDKRLSWN 310
++ E + L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 23.0 bits (47), Expect = 3.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Frame = +2
Query: 230 NIRESESTVRIQTDLQMNWIDKRLSWN 310
++ E + L++ W+D L WN
Sbjct: 25 DVDEKNQILTTNAWLKLEWVDYNLQWN 51
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 23.0 bits (47), Expect = 3.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Frame = +3
Query: 342 VSSEXLWXPDVVLLNGG 392
V S+ +W PD+ + N G
Sbjct: 119 VKSDDIWVPDISVYNSG 135
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 3.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Frame = +2
Query: 230 NIRESESTVRIQTDLQMNWIDKRLSWN 310
++ E + L++ W+D L WN
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWN 119
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 23.0 bits (47), Expect = 3.7
Identities = 7/27 (25%), Positives = 13/27 (48%)
Frame = +2
Query: 230 NIRESESTVRIQTDLQMNWIDKRLSWN 310
++ E + L++ W+D L WN
Sbjct: 93 DVDEKNQILTTNAWLKLEWVDYNLQWN 119
>DQ026038-1|AAY87897.1| 520|Apis mellifera nicotinic acetylcholine
receptor beta1subunit protein.
Length = 520
Score = 22.6 bits (46), Expect = 4.8
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +2
Query: 191 KIVVNLTL-HLRHANIRESESTVRIQTDLQMNWIDKRLSWN 310
K+ VN L ++ N+ E ++ L+ W D +L W+
Sbjct: 51 KVHVNFGLAFVQLINVNEKNQIMKSNVWLRFIWTDYQLQWD 91
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,761
Number of Sequences: 438
Number of extensions: 2562
Number of successful extensions: 22
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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