Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_E11
         (838 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   1.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.6  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 349 LKELRAQILYRLEQYQDCYNLYRDLLKNTTD 441
           LKE   +I +++E  +DC   + DLL    +
Sbjct: 516 LKEKENEIDFKIEVTEDCNKSFNDLLTQVAE 546



 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = -1

Query: 193 WSWRKHTTLQXNAFCSFGAICSXFPAAF 110
           WS RK    +   + SFG I +  P  F
Sbjct: 333 WSLRKAFARKKTDYSSFGKILATEPTLF 360


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = -3

Query: 623 SALFKTDXASLYFPRIAKVLPELYANSYV 537
           + L + D  S+ FP + ++LP+ + +S V
Sbjct: 143 AVLTRQDTQSVIFPPVYEILPQHHLDSRV 171


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,500
Number of Sequences: 438
Number of extensions: 3254
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)