Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_E02
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.25 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    22   8.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.25
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +2

Query: 593 PPXPPPXVXXKTPPPPXXXXPXV 661
           PP PPP V    PPPP    P V
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAV 785



 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +2

Query: 587 KHPPXPPPXVXXKTPPPPXXXXPXVLXXXKKXXXXPPXXG 706
           K PP PPP V   TP P     P            PP  G
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPG 769


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/20 (45%), Positives = 9/20 (45%)
 Frame = -2

Query: 750 PPPPPPXKXXKXXXPPXXGG 691
           PPPPPP        PP   G
Sbjct: 311 PPPPPPPSRRNRGKPPIGNG 330


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 22.2 bits (45), Expect(2) = 8.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -2

Query: 750  PPPPPPXKXXK 718
            PPPPPP +  K
Sbjct: 1097 PPPPPPAEVEK 1107



 Score = 21.4 bits (43), Expect(2) = 8.3
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = -2

Query: 765  KKXXXPPPPPP 733
            K    PPPPPP
Sbjct: 1090 KPSAVPPPPPP 1100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,136
Number of Sequences: 5004
Number of extensions: 24098
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)