Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_E02
(796 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 31 0.72
Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical pr... 29 2.9
AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily a... 29 3.3
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 6.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 28 6.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 28 6.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 28 6.7
Z79694-3|CAB01962.3| 594|Caenorhabditis elegans Hypothetical pr... 28 8.9
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 8.9
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 8.9
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/... 28 8.9
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/... 28 8.9
AY387697-1|AAR26326.1| 594|Caenorhabditis elegans SOL-1 protein. 28 8.9
Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical pr... 25 9.7
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXG 707
PP PP PPPP LS PPP G
Sbjct: 33 PPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKG 70
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXG 707
PP PP PPPP LS PPP G
Sbjct: 96 PPPPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPPKG 133
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXG 707
PP PP PPPP LS PPP G
Sbjct: 127 PPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKG 164
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXG 707
PP PP PPPP LS PPP G
Sbjct: 158 PPPPPKGTGSPPPPPTGEPQDLSTEGNASRRPPPPPKG 195
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXG 707
PP PP PPPP LS PPP G
Sbjct: 189 PPPPPKGTGTPPPPPTGEPQDLSAEGYASRRPPPPPKG 226
Score = 31.5 bits (68), Expect = 0.72
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXG 707
PP PP PPPP LS PPP G
Sbjct: 251 PPPPPKGTGSPPPPPTGEPQDLSGEGNASRRPPPPPKG 288
Score = 30.7 bits (66), Expect = 1.3
Identities = 14/39 (35%), Positives = 14/39 (35%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXGG 710
PP PP PPPP LS PPP G
Sbjct: 64 PPPPPKGTGTPPPPPTGEPQDLSAEEGNASRRPPPPPKG 102
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/38 (34%), Positives = 13/38 (34%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXG 707
PP PP PPP LS PPP G
Sbjct: 220 PPPPPKGTGSPTPPPTGEPQDLSGEGNASRRPPPPPKG 257
>Z12018-1|CAD88219.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = -2
Query: 750 PPPPPPXKXXKXXXPPXXGGXXXFFFXXXRTXGXXXXGGGGVXXXTXGGGXGG 592
PPPPPP P GG + G GGG + GGG G
Sbjct: 302 PPPPPPPPPPPAPAPVSSGG--GYSEQSSGGGGGSSYSGGGEASSSSGGGYSG 352
>Z11126-8|CAD88221.2| 774|Caenorhabditis elegans Hypothetical
protein ZK643.8 protein.
Length = 774
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/53 (32%), Positives = 19/53 (35%)
Frame = -2
Query: 750 PPPPPPXKXXKXXXPPXXGGXXXFFFXXXRTXGXXXXGGGGVXXXTXGGGXGG 592
PPPPPP P GG + G GGG + GGG G
Sbjct: 302 PPPPPPPPPPPAPAPVSSGG--GYSEQSSGGGGGSSYSGGGEASSSSGGGYSG 352
>AF106580-3|AAC78205.1| 881|Caenorhabditis elegans Temporarily
assigned gene nameprotein 268 protein.
Length = 881
Score = 29.1 bits (62), Expect = 3.8
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +2
Query: 593 PPXPPPXVXXKTPPPP 640
PP PPP K PPPP
Sbjct: 86 PPPPPPPPTLKAPPPP 101
Score = 25.8 bits (54), Expect(2) = 3.3
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -2
Query: 750 PPPPPPXKXXKXXXPP 703
PPPPPP K PP
Sbjct: 86 PPPPPPPPTLKAPPPP 101
Score = 21.8 bits (44), Expect(2) = 3.3
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 771 LXKKXXXPPPPPP 733
+ K PPPPPP
Sbjct: 62 IVKATPPPPPPPP 74
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/44 (31%), Positives = 14/44 (31%)
Frame = +3
Query: 579 GEKNTPPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXGG 710
G PP PP PPPPP PPP G
Sbjct: 79 GPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPPSG 122
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXGGXF 716
PP PP PPPPP K PPP G F
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGF------KGGPPPPPPPGMF 793
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXGGXF 716
PP PP PPPPP K PPP G F
Sbjct: 759 PPPPPPPGGCPPPPPPPPPGGF------KGGPPPPPPPGMF 793
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/41 (36%), Positives = 15/41 (36%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPPXXGGXF 716
PP PP PPPPP K PPP G F
Sbjct: 342 PPPPPPPGGCPPPPPPPPPGGF------KGGPPPPPPPGMF 376
>Z79694-3|CAB01962.3| 594|Caenorhabditis elegans Hypothetical
protein C15A11.3 protein.
Length = 594
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 135 PRHFGYFSFARIHSCHSV-F*VTSGS 61
P FGYFS A H C V F VTSG+
Sbjct: 14 PILFGYFSHASEHECKCVLFNVTSGN 39
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPP 698
PP PP PPPPP PPP
Sbjct: 287 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 321
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +3
Query: 594 PPXPPXXXXXKPPPPPXXXXXLSXXXXKKXXXPPP 698
PP PP PPPPP PPP
Sbjct: 297 PPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPP 331
>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
c protein.
Length = 1510
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 587 KHPPXPPPXVXXKTPPPP 640
K P PPP + ++PPPP
Sbjct: 293 KMSPIPPPPIKEESPPPP 310
>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
(trithorax/polycomb) domaincontaining protein 2, isoform
a protein.
Length = 1507
Score = 27.9 bits (59), Expect = 8.9
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 587 KHPPXPPPXVXXKTPPPP 640
K P PPP + ++PPPP
Sbjct: 293 KMSPIPPPPIKEESPPPP 310
>AY387697-1|AAR26326.1| 594|Caenorhabditis elegans SOL-1 protein.
Length = 594
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/26 (57%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = -2
Query: 135 PRHFGYFSFARIHSCHSV-F*VTSGS 61
P FGYFS A H C V F VTSG+
Sbjct: 14 PILFGYFSHASEHECKCVLFNVTSGN 39
>Z81034-4|CAB02729.1| 541|Caenorhabditis elegans Hypothetical
protein C15C6.3 protein.
Length = 541
Score = 24.6 bits (51), Expect(2) = 9.7
Identities = 8/16 (50%), Positives = 9/16 (56%)
Frame = -2
Query: 750 PPPPPPXKXXKXXXPP 703
PPPPPP + PP
Sbjct: 479 PPPPPPENEPEEFPPP 494
Score = 21.4 bits (43), Expect(2) = 9.7
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -2
Query: 771 LXKKXXXPPPPPP 733
L + PPPPPP
Sbjct: 469 LESEEAAPPPPPP 481
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,546,819
Number of Sequences: 27780
Number of extensions: 245026
Number of successful extensions: 2694
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 704
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2019
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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