Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_D22
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    28   1.6  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   4.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/18 (55%), Positives = 10/18 (55%)
 Frame = -1

Query: 492 GGGXPPPPPKXXXGXAPP 439
           GG  PPPPP    G  PP
Sbjct: 759 GGPPPPPPPPGVAGAGPP 776


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 14/36 (38%), Positives = 15/36 (41%)
 Frame = +3

Query: 477 GXXPPPXFXXGXPPPXFFXXXXXPXPXPXXXXKKKK 584
           G  PPP      PPP F      P P P    KK+K
Sbjct: 7   GNPPPPP-----PPPGFEPPSQPPPPPPPGYVKKRK 37



 Score = 25.4 bits (53), Expect = 8.4
 Identities = 12/33 (36%), Positives = 13/33 (39%)
 Frame = +3

Query: 489 PPXFXXGXPPPXFFXXXXXPXPXPXXXXKKKKK 587
           PP      PPP  F     P P P     KK+K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPPPPPGYVKKRK 37


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,826,738
Number of Sequences: 5004
Number of extensions: 25108
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)