Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_D19
(838 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 31 0.27
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 30 0.47
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 29 0.62
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 28 1.4
SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr 1|||M... 27 4.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.4
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 5.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 7.6
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 30.7 bits (66), Expect = 0.27
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 187 VRVHRADTGRSSNELDRQTTELERRGMGL-QHLAG 288
+R H+ GR+ ELDR+ T+L++R L Q + G
Sbjct: 18 LRAHQRSLGRAERELDRERTKLDQRERALIQEIKG 52
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 29.9 bits (64), Expect = 0.47
Identities = 17/50 (34%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Frame = -3
Query: 695 AXAXPRXXAPRGXXXEXPPRXPPXRPRXPPXXEPPPXRXPPQ--XPPXDP 552
A A P P PP+ P PP PPP PP PP P
Sbjct: 1682 APAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAP 1731
Score = 29.5 bits (63), Expect = 0.62
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -3
Query: 683 PRXXAPRGXXXEXPPRXPPXRPRXPPXXEPPPXRXPPQXPP 561
P+ AP PP PP PP PP PP PP
Sbjct: 1694 PQSAAPPQMSAPTPP--PPPMSVPPPPSAPPMPAGPPSAPP 1732
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 698 RAXAXPRXXAPRGXXXEXPPRXPPXRPRXPPXXEPPPXRXPPQXP 564
++ A P+ AP PP P P PP PP PP P
Sbjct: 1695 QSAAPPQMSAPT---PPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 29.5 bits (63), Expect = 0.62
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 620 PRXPPXXEPPPXRXPPQXPPXDP 552
P PP PPP PP PP P
Sbjct: 6 PGNPPPPPPPPGFEPPSQPPPPP 28
Score = 29.1 bits (62), Expect = 0.82
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -3
Query: 644 PPRXPPXRPRXPPXXEPPPXRXPPQXP 564
PP PP P PP EPP PP P
Sbjct: 5 PPGNPPPPP-PPPGFEPPSQPPPPPPP 30
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/46 (36%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = -3
Query: 632 PPXRPRXPPXXEPPPXRXPP-QXPPXDPXXXXKXXGXXXPRXGXGL 498
PP P PP PPP PP Q PP P K P L
Sbjct: 5 PPGNPPPPP---PPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNL 47
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.4
Identities = 18/50 (36%), Positives = 19/50 (38%)
Frame = +1
Query: 553 GSXGGXCGGXLXGGGSXXGGXRGLXGGXLGGXSXXSPRGAXXRGXAXALR 702
G GG GG GG+ GG G G GG S RG G R
Sbjct: 145 GGRGGSRGGF---GGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFR 191
>SPAC1F7.09c |||allantoicase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 342
Score = 26.6 bits (56), Expect = 4.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 265 FPCVPTQSFVDPIHLKICQYPHGGL 191
F +P Q+F H+++C YP GG+
Sbjct: 150 FKEIPQQNFT---HVRLCMYPDGGI 171
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/44 (29%), Positives = 13/44 (29%)
Frame = -3
Query: 683 PRXXAPRGXXXEXPPRXPPXRPRXPPXXEPPPXRXPPQXPPXDP 552
P P PP PP P P P PP P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
Score = 25.8 bits (54), Expect = 7.6
Identities = 24/93 (25%), Positives = 25/93 (26%), Gaps = 12/93 (12%)
Frame = -3
Query: 704 PRRAXAXPRXXAP--RGXXXEXPPRXPPXRP-RXPPXXEP---------PPXRXPPQXPP 561
PR A + R P PP PP P R P P PP PP PP
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425
Query: 560 XDPXXXXKXXGXXXPRXGXGLXAXPPGTXXXAP 462
P P PP P
Sbjct: 426 SAPPSLPPSAPPSLPMGAPAAPPLPPSAPIAPP 458
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/48 (31%), Positives = 18/48 (37%)
Frame = -3
Query: 704 PRRAXAXPRXXAPRGXXXEXPPRXPPXRPRXPPXXEPPPXRXPPQXPP 561
P +A P P P + PP P P P P + PP PP
Sbjct: 161 PSKAPPIPSSLPPPAQPAA-PVKSPPSAPSLPSAVPPMPPKVPP--PP 205
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/40 (40%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Frame = -3
Query: 689 AXPRXXAPRGXXXEX-PPRXPPXRPRXPPXXEPPPXRXPP 573
A P AP E PP P RP PP P P PP
Sbjct: 123 APPSAPAPPTPQSELRPPTSAPPRPSIPP---PSPASAPP 159
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/51 (27%), Positives = 17/51 (33%)
Frame = -3
Query: 704 PRRAXAXPRXXAPRGXXXEXPPRXPPXRPRXPPXXEPPPXRXPPQXPPXDP 552
P+ + A P AP P P PP PP + PP P
Sbjct: 1162 PKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,219,830
Number of Sequences: 5004
Number of extensions: 39289
Number of successful extensions: 167
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 136
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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