Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_D18
         (835 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.20 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.3  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   7.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = -1

Query: 700 PPPPXXXGGGXXFFXXPPPPPPP 632
           PPPP   G G      PPPPPPP
Sbjct: 765 PPPPGVAGAGPP----PPPPPPP 783



 Score = 30.3 bits (65), Expect = 0.35
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -2

Query: 702 PPPPPXXGGGGXXFFXXPPPPPP 634
           PPPPP   G        PPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 27.1 bits (57), Expect = 3.3
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 701 PPPPPXXGGGGXXFFXXPPPPPP 633
           PPPPP    GG  ++   P   P
Sbjct: 779 PPPPPAVSAGGSRYYAPAPQAEP 801



 Score = 26.6 bits (56), Expect = 4.3
 Identities = 12/22 (54%), Positives = 12/22 (54%)
 Frame = -1

Query: 697 PPPXXXGGGXXFFXXPPPPPPP 632
           PPP    GG      PPPPPPP
Sbjct: 752 PPPAPIMGGP-----PPPPPPP 768



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -3

Query: 701 PPPPPXXGGGGXXFFXXPPPPPP 633
           PPP P  GG        PPPPPP
Sbjct: 752 PPPAPIMGG--------PPPPPP 766


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -3

Query: 701 PPPPPXXGGGGXXFFXXPPPPP 636
           PPPPP   G        PPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 11/22 (50%), Positives = 11/22 (50%)
 Frame = -1

Query: 700 PPPPXXXGGGXXFFXXPPPPPP 635
           PPPP    G       PPPPPP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPP 30



 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = -1

Query: 700 PPPPXXXGGGXXFFXXPPPPPPP 632
           PPPP   G        PPPPPPP
Sbjct: 10  PPPPPPPGFEPP--SQPPPPPPP 30


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 634 GGGGGGXXKKXXPPPPXXGGGGG 702
           GGG GG       PPP  GG GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGG 209


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 13/30 (43%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
 Frame = -1

Query: 700 PPPPXXX-------GGGXXFFXXPPPPPPP 632
           PPPP          G G      PPPPPPP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.152    0.518 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,672,703
Number of Sequences: 5004
Number of extensions: 24241
Number of successful extensions: 201
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)