Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_D17
         (831 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   138   1e-33
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   134   1e-32
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    42   1e-04
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    28   1.9  
SPBC29B5.02c |isp4||OPT oligopeptide transporter family |Schizos...    27   4.3  
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   7.5  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   7.5  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   7.5  
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M...    26   7.5  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   10.0 

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  138 bits (333), Expect = 1e-33
 Identities = 62/95 (65%), Positives = 78/95 (82%)
 Frame = +2

Query: 80  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 259
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 260 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAG 364
            IENPADV VISSRP+G RAVLKFAAHTGAT IAG
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAG 104



 Score =  130 bits (315), Expect = 2e-31
 Identities = 63/101 (62%), Positives = 73/101 (72%)
 Frame = +1

Query: 352 AYCGTFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 531
           A  G FTPG FTN I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  V
Sbjct: 101 AIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHV 160

Query: 532 DIAIPCNTKSSQSIGLMWWLLAREVLXLRGVLPRDQRWDVV 654
           D+AIP N K  +SIGL W+LLAREVL LRG + R   W+V+
Sbjct: 161 DVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVM 201



 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 669 FYRDPEXSEKDEQQ 710
           FYRDPE  E++E+Q
Sbjct: 206 FYRDPEEIEREEEQ 219


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  134 bits (324), Expect = 1e-32
 Identities = 64/101 (63%), Positives = 74/101 (73%)
 Frame = +1

Query: 352 AYCGTFTPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFV 531
           A  G FTPG FTN I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  V
Sbjct: 100 AIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHV 159

Query: 532 DIAIPCNTKSSQSIGLMWWLLAREVLXLRGVLPRDQRWDVV 654
           DIAIP N K  +SIGL+W+LLAREVL +RG L R   WDV+
Sbjct: 160 DIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVM 200



 Score =  133 bits (321), Expect = 3e-32
 Identities = 58/99 (58%), Positives = 79/99 (79%)
 Frame = +2

Query: 68  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 247
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 248 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAG 364
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAG
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAG 103


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 20/62 (32%), Positives = 34/62 (54%)
 Frame = +1

Query: 415 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSQSIGLMWWLL 594
           P L+++L+P ++     EA   ++P I + +TD+  R V   IP N  S +   L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 595 AR 600
           +R
Sbjct: 240 SR 241


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/46 (26%), Positives = 27/46 (58%)
 Frame = +2

Query: 203 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAH 340
           V+++R TW +LV+  +  + + N  ++ +I++    +  V+ FA H
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVH 134


>SPBC29B5.02c |isp4||OPT oligopeptide transporter family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 785

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +2

Query: 305 FGQRAVLKFAAHTGATPIAGLSHQVLLLTRSKLHSVNLVS-*LYWTLHK 448
           FG    L  A       +AGLS ++L+   S L  VNLV   L  TLH+
Sbjct: 198 FGYEICLTLATQLIGYGLAGLSRRLLVRPASMLWPVNLVQCTLIKTLHR 246


>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 381 STWCESPAIGVAPVCAANFSTAR*PKG 301
           S W ESP +G+  V   NF+    P+G
Sbjct: 327 SYWHESPNMGLGTVGMGNFTVGNYPEG 353


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 565 QSIGLMWWLLAREVLXLRGVLPRDQRWD 648
           Q IGL W L  REV   + +  R++ WD
Sbjct: 363 QEIGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 437 TLHKTINPLLKLHMSTFL*LLCATQTP-H*DLWTLLSHATPSLPSLLV 577
           +L+K + PLL   +  F  LL + +TP   DL+T L    P   SLL+
Sbjct: 735 SLYKEVMPLLHALLEAFNSLLISARTPKEKDLFTELCLTIPVRLSLLL 782


>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 416

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -1

Query: 381 STWCESPAIGVAPVCAANFSTAR*PKG 301
           S W ESP +G+  V   NF+    P+G
Sbjct: 327 SYWHESPNMGLGTVGMGNFTVGNYPEG 353


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -2

Query: 287 RTHQRGSRWLRQHEQPEQVFPRYDA 213
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,408,671
Number of Sequences: 5004
Number of extensions: 70465
Number of successful extensions: 154
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)