Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_D15
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.63 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   1.9  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   4.4  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 545 PPPPXXGGGGGXXPPPP 495
           PPPP   G G   PPPP
Sbjct: 765 PPPPGVAGAGPPPPPPP 781



 Score = 28.7 bits (61), Expect = 0.83
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +2

Query: 503 GGXXPPPPPXGGGGXXXXXXXPPXXXFXGG 592
           GG  PPPPP G  G       PP      G
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 28.7 bits (61), Expect = 0.83
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 545 PPPPXXGGGGGXXPPPP 495
           PPPP  G  G   PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPP 779



 Score = 28.7 bits (61), Expect = 0.83
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 545 PPPPXXGGGGGXXPPPP 495
           PPPP    G G  PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -2

Query: 545 PPPPXXGGGGGXXPPPP 495
           PPPP   G  G  PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPP 778



 Score = 27.5 bits (58), Expect = 1.9
 Identities = 12/31 (38%), Positives = 12/31 (38%)
 Frame = +2

Query: 500 GGGXXPPPPPXGGGGXXXXXXXPPXXXFXGG 592
           GG   PPPPP   G        PP     GG
Sbjct: 759 GGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/29 (37%), Positives = 11/29 (37%)
 Frame = -1

Query: 600 PPXPPXXXXXGGXXXXXXXPPPPXGGGGG 514
           PP PP      G       PPPP    GG
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = -2

Query: 599 PPXPXKXXXXGXXXXXXXPPPPXXGGGGGXXPPPP 495
           PP P              PPP    GG    PPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPP 768



 Score = 25.4 bits (53), Expect = 7.7
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = -1

Query: 600 PPXPPXXXXXGGXXXXXXXPPPPXGGGGGXXPPP 499
           PP PP     G        PPP    GG     P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAP 795


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/53 (26%), Positives = 14/53 (26%)
 Frame = +2

Query: 524 PPXGGGGXXXXXXXPPXXXFXGGXGGXKKKKXXXXXPPPPPXXGGGVXXXXPP 682
           PP G G        PP        G           PPPPP          PP
Sbjct: 325 PPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPP 377


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = +2

Query: 500 GGGXXPPPPPXGGGGXXXXXXXPPXXXFXGGXGG 601
           GG   PPP P G GG              GG GG
Sbjct: 195 GGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGG 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,879,996
Number of Sequences: 5004
Number of extensions: 27625
Number of successful extensions: 125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)