Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_D10
         (726 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.024
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.29 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.39 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.68 

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.024
 Identities = 19/50 (38%), Positives = 19/50 (38%)
 Frame = -3

Query: 451 PPPGXXXPPFXKKXKXGXPPXXXWGXXPPXXXXPPPPPGVXXXXFXGPPP 302
           PPP    P          PP    G  PP    PPPPPGV       PPP
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPP----PPPPPGVAGAGPPPPPP 780



 Score = 28.7 bits (61), Expect = 0.89
 Identities = 15/37 (40%), Positives = 15/37 (40%)
 Frame = +3

Query: 444 GGGXPPPPXPXXKXXGPPXXKXGGXXXPPPXFXXXGG 554
           GG  PPPP P     GPP         PPP     GG
Sbjct: 759 GGPPPPPPPPGVAGAGPP------PPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 30.3 bits (65), Expect = 0.29
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 398 PPKXXXGXXPPXXXXPPPPPG 336
           PP    G  PP    PPPPPG
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPG 31



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = -2

Query: 371 PPXXXXPPPPPGGXXXXXFXAPP 303
           PP    PPPPP G        PP
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPPP 27


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 21/71 (29%), Positives = 23/71 (32%)
 Frame = -3

Query: 514 PPXFXXGGPXXLXXGXGGGGXPPPGXXXPPFXKKXKXGXPPXXXWGXXPPXXXXPPPPPG 335
           PP     G   +  G      PPP    PP  +    G  P    G   P    PPPPP 
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPP----PPPPRSNAAGSIPLPPQGRSAP----PPPPPR 367

Query: 334 VXXXXFXGPPP 302
                   PPP
Sbjct: 368 SAPSTGRQPPP 378



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/49 (32%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
 Frame = -2

Query: 404 GXPPKXXXGXXPPXXXXPPPPPGGXXXXXFXAPP-XXXXXPXFPPRGGP 261
           G PP    G        PPPPP          PP      P  PPR  P
Sbjct: 323 GKPP-IGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAP 370



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/42 (28%), Positives = 13/42 (30%)
 Frame = -1

Query: 429 PPXXKKXXXGXPQXXXGXXXPXXXXXPPPPRGXXKXXFXGPP 304
           PP   +   G P    G         PPPPR         PP
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 18/48 (37%), Positives = 18/48 (37%)
 Frame = +3

Query: 303 GGGPKXXXXXTPGGGGGXXXXGGXXPXXXFGGXPXFXFXXKGGXXXPG 446
           GGGP        G GGG    GG      FGG P       GG   PG
Sbjct: 227 GGGPGGFEGGPGGFGGGPGGFGGGL--GGFGGGPGGFGGGPGGHGGPG 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,074
Number of Sequences: 5004
Number of extensions: 26632
Number of successful extensions: 99
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)