Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_D09
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.17 
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    29   0.51 
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph...    27   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.3  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +3

Query: 381 PPGGXXXPXPXGXXKXXPPPXXKRGG-XXPPPXFSXXXXGPPPXXXXXP 524
           PP     P P       PPP    GG   PPP       GPPP     P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 379 PPPGGXXXPXPXXXXKXPPPPXXKGGGXXXPP 474
           PPP     P P       PPP    GG   PP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 16/46 (34%), Positives = 18/46 (39%)
 Frame = +2

Query: 344 APXXFXXXGGXXPPRGGXPPXPPXXXKXXPPPXXKKGGXXXXPXFF 481
           AP          PPR   PP  P   +  PPP   +GG    P FF
Sbjct: 15  APARSASTAAALPPRTMAPPPAPSRVQQAPPPTAVQGG--SSPGFF 58


>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
           Phf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 538

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 109 HDRIAPRKVRSGIPPRIPKSXSP 177
           H R A  + +S +PP +P S SP
Sbjct: 127 HHRSADSQTKSALPPNVPASSSP 149


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 373 PPXXXKXXXGPPXGXGXNPXXXXPPPP 293
           PP   +    PP G G +     PPPP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPP 341


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,514
Number of Sequences: 5004
Number of extensions: 29765
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)