Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_D07
         (786 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S...    27   3.0  
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S...    27   4.0  
SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1 |Schiz...    27   4.0  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   7.0  
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    26   7.0  
SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   9.3  
SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces ...    25   9.3  

>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
           Paa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 590

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
 Frame = -1

Query: 450 RNGTHGRPCALDRDKEGXALQIRPEQSHVSVR*ARVPQLVNQPLVPHTVEGLLDIEKDR- 274
           R  + G  CA     E  A+++   QS   +     P +V +P   +  + +  + K   
Sbjct: 144 RASSAGLYCAAYSQSENPAVKVSLRQSFSHLCHDEAP-MVRRPAATNCAKFVFLVTKQEA 202

Query: 273 -DRVLA*VSPVCQVMQDTGQLQSRRVAASKAELLRPEENIRRY 148
            D  +   + +    QD+ +L S  +  S AE+L+ +  IR Y
Sbjct: 203 IDEFIPLFNSLSNDDQDSVRLLSFDIMVSLAEVLKSDSEIRHY 245


>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
           L3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 326

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 81  QLPTDYLALARGQVVRAAAPEENIAVYS 164
           QLP+DYL +  G++ +A+ P  +I + S
Sbjct: 293 QLPSDYLEVNDGKIPKASEPYTSIPLVS 320


>SPBC18H10.02 |lcf1||long-chain-fatty-acid-CoA ligase Lcf1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 676

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 283 LDIEKAFDRVWHEGLVHKLRDAGL 354
           + I  A+D +  EGL+H LR++G+
Sbjct: 146 MTIVTAYDTLGEEGLLHSLRESGV 169


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +3

Query: 15  GNLETGQDHRLAQTRQGQEKALQLPTDYLALARGQVVRAAAPEENIAVYSPQAGAIRL*K 194
           G+L     H+L+ T + Q KA   P  YLA +  +  RA     N + Y P   ++    
Sbjct: 163 GSLRCSSKHQLSVTPEIQPKAKFRPNSYLASSVEESNRA----NNTSPYPPSNSSVTALP 218

Query: 195 RP 200
           +P
Sbjct: 219 KP 220


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = -2

Query: 548 DARQREVLSYDRDEGGALLVESRATRQRVFRCAVMGRTEDRAPSTATKKVXPS 390
           D     +LS D DEG A+  + + T+Q+  + +V GR   R PS+ +     S
Sbjct: 96  DGIMSPILSLDIDEGKAIAPKKKQTKQK--KPSVRGR-RGRKPSSLSSSTLHS 145


>SPCC70.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 244

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +1

Query: 208 TLQLTRVLHHLADRRNSGQYTVAVLLDIEKAF 303
           T+ L  + HHL     +  YT+   LDI K F
Sbjct: 141 TVSLFGLFHHLMFLTTNYSYTINSTLDISKGF 172


>SPBC1683.08 |ght4||hexose transporter Ght4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 219 QLQSRRVAASKAELLRPEENIRRYSPQEQ 133
           Q++SRR+  SK E  R  E  + Y  QE+
Sbjct: 482 QIESRRIHFSKEEEKREREKSKGYRGQEE 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,399,344
Number of Sequences: 5004
Number of extensions: 44845
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)