Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_C19
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    33   0.046
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   7.0  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         26   7.0  

>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +1

Query: 4   WDDLFMEEIVPLXVSAASAIPSLVNAFSSSKPPQTDNPSARSMEYA 141
           W D+F  + +P+  ++A  IPSL  A   SK P T+     SMEYA
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTEK-HVSSMEYA 281


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 100 GVWKKRKH*PRREWPKRQKRXKAQF 26
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 43  VSAASAIPSLVNAFSSSKPPQTDNPSARSMEYATFGLALTALFW 174
           VS  S+ PS+  +FSS    +  NP A S   A F  +  ++ W
Sbjct: 66  VSHTSSSPSVGTSFSSINLREVKNPLAGSDSTAPFINSTNSVLW 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,461
Number of Sequences: 5004
Number of extensions: 19482
Number of successful extensions: 59
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)