Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_C18
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   167   2e-42
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   162   6e-41
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    31   0.14 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.57 
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    27   4.0  
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c...    26   7.0  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  167 bits (405), Expect = 2e-42
 Identities = 76/121 (62%), Positives = 94/121 (77%)
 Frame = +1

Query: 82  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVV 261
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL + WEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 262 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLNCIG 441
            IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+    
Sbjct: 70  TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129

Query: 442 P 444
           P
Sbjct: 130 P 130


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  162 bits (393), Expect = 6e-41
 Identities = 72/125 (57%), Positives = 95/125 (76%)
 Frame = +1

Query: 70  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAA 249
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL + WEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 250 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 429
           R +  IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+
Sbjct: 65  RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124

Query: 430 NCIGP 444
               P
Sbjct: 125 VVTDP 129


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.5 bits (68), Expect = 0.14
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = +3

Query: 657 PPPPXPXFXXXXXXPPPPP 713
           PPPP P F      PPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 657 PPPPXPXFXXXXXXPPPPP 713
           PPPP P        PPPPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPP 28


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 657 PPPPXPXFXXXXXXPPPPPXXXXGGG 734
           PPPP P        PPPPP      G
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 657 PPPPXPXFXXXXXXPPPPP 713
           PPPP P        PPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 27.9 bits (59), Expect = 1.7
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +3

Query: 657 PPPPXPXFXXXXXXPPPPPXXXXGGG 734
           PPPP          PPPPP     GG
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGG 789



 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 657 PPPPXPXFXXXXXXPPPPP 713
           PPPP P        PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 13/59 (22%), Positives = 28/59 (47%)
 Frame = +1

Query: 205 VINLRRAWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 381
           V+++R  W +LV+  +  + + N  ++ +I++    +  V+ FA H           PG
Sbjct: 89  VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147


>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +2

Query: 332 LPRTPVLRLLRDVSHQVLLLTRSKLHSVNLVS*IVLDPGTRPSTHY*SFICQHSWEWLXA 511
           L  +P L  L + S+Q  L+   K + +NL S I++D G   +    +F+ Q     +  
Sbjct: 344 LSASPYLEYL-EASYQSDLVAAIKKYKINLRSLIIIDEGVSNTVKDLAFLPQSLTTLIVK 402

Query: 512 KXNPPXKI 535
             NP   I
Sbjct: 403 PCNPASTI 410


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,705
Number of Sequences: 5004
Number of extensions: 61740
Number of successful extensions: 167
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)