Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_C09
(825 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 226 1e-59
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 223 1e-58
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 29 4.5
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 5.9
09_06_0103 + 20873310-20873382,20873530-20873735 29 5.9
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 29 5.9
01_01_0925 - 7306881-7308486,7308797-7308906 28 7.8
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 226 bits (553), Expect = 1e-59
Identities = 105/170 (61%), Positives = 128/170 (75%)
Frame = +2
Query: 47 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWE 226
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL + WE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 227 KLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAF 406
KL LAAR +VAIENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSF 120
Query: 407 REPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 556
EPRLLI+ DP DHQPI E++ NIP IA C+TDSP+R+VDI IP N K
Sbjct: 121 SEPRLLILTDPRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170
Score = 31.5 bits (68), Expect = 0.84
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +1
Query: 541 PMQHQVFHSIGLMWWLLAREXLKXSXCASPXPXWDVGVN 657
P ++ +SIG ++WLLAR L+ P WDV V+
Sbjct: 166 PANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVD 204
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 223 bits (545), Expect = 1e-58
Identities = 102/159 (64%), Positives = 123/159 (77%)
Frame = +2
Query: 80 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRAWEKLVLAARAVVA 259
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL + WEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 260 IENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDP 439
IENP D+ V S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP
Sbjct: 72 IENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDP 131
Query: 440 AQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 556
DHQPI E++ NIP IA C+TDSP+R+VDI IP N K
Sbjct: 132 RTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNK 170
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 541 PMQHQVFHSIGLMWWLLAREXLKXSXCASPXPXWDVGVN 657
P ++ SIG ++WLLAR L+ P WDV V+
Sbjct: 166 PANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVD 204
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 29.1 bits (62), Expect = 4.5
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +1
Query: 154 PDGDLCLQTTC*WYPCDQLASCLGKTCSGCSCCRSH 261
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 5.9
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 147 TFSAPRWVVAASILVTSSSLRASTSNP 67
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>09_06_0103 + 20873310-20873382,20873530-20873735
Length = 92
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Frame = +1
Query: 325 VCRAHRCYAYC---GTFHTRCFY*PDPSCIP*TSSLDCI 432
+CR+ RC YC G RC + DPS ++ +C+
Sbjct: 45 LCRSTRCNQYCVSEGATRGRCGFSSDPSATALKNATECL 83
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 28.7 bits (61), Expect = 5.9
Identities = 22/78 (28%), Positives = 27/78 (34%)
Frame = +1
Query: 100 CHQNACCNHPSWGRKC*LPDGDLCLQTTC*WYPCDQLASCLGKTCSGCSCCRSHREPR*C 279
CH C P GR+ P G + CD A+ G TC C H+ P C
Sbjct: 324 CHAGKCGGCPLQGRRT-CPCGKKDYPSL----DCDAEAATCGSTCEKVLGCGRHKCPERC 378
Query: 280 VRHLITALRSACCTEVCR 333
R T+ CR
Sbjct: 379 HRGSCVETCRLVITKSCR 396
>01_01_0925 - 7306881-7308486,7308797-7308906
Length = 571
Score = 28.3 bits (60), Expect = 7.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 600 FTGQQPPHQTNRVEDLVLHGIA 535
FT ++PPH + V LVLH +A
Sbjct: 250 FTKRRPPHHRDTVSCLVLHAVA 271
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,500,241
Number of Sequences: 37544
Number of extensions: 555315
Number of successful extensions: 1200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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