Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_C04
         (814 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c...    32   0.11 
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    28   1.4  
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    26   5.5  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    26   7.3  

>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 547

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -2

Query: 183 SCYLNLVSHKAKGCRYYYFIRCYAK 109
           SC LN+V HK K    YY IR YAK
Sbjct: 316 SCSLNIVFHKHKKVCTYYMIRHYAK 340


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 180 CYLNLVSHKAKGCRYYYFI 124
           C LNL S+K  GCR +Y I
Sbjct: 382 CSLNLASNKITGCRTFYHI 400


>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 590 ERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCI 477
           ERPSA   R    I  + D+     SG    A+FS+ +
Sbjct: 40  ERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 222 LHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKP 323
           LH GKLS  ++    D  Y  +  S   PL  +P
Sbjct: 683 LHLGKLSENYIHYYVDSMYALFIYSTDIPLKAEP 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,391,252
Number of Sequences: 5004
Number of extensions: 70187
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)