Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_C04
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0035 + 17378541-17381276 31 1.1
03_06_0523 + 34499533-34499705,34499808-34499917,34500037-345002... 31 1.4
06_01_0080 + 644021-645463 30 2.5
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 29 3.3
03_06_0153 - 32024787-32024892,32024997-32025079,32025159-320259... 29 3.3
02_05_0425 - 28845707-28846189,28846262-28846403,28846496-288469... 29 3.3
11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118 28 7.7
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389... 28 7.7
05_02_0052 + 6124880-6124956,6125097-6125250,6125327-6125920,612... 28 7.7
04_01_0042 + 473912-474058,474208-474349,474442-476264 28 7.7
01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036 28 7.7
>05_04_0035 + 17378541-17381276
Length = 911
Score = 31.1 bits (67), Expect = 1.1
Identities = 19/49 (38%), Positives = 21/49 (42%)
Frame = +3
Query: 615 GHPQAVPQEDHPARHRSYPGLSPRQPWLLQSGAPPWTVSGPRWVTPKSS 761
GHPQ PQ H A PG PW AP V P + P+SS
Sbjct: 730 GHPQP-PQPMHSAPQTQQPGYGTSHPWHTGFNAP--QVQQPSYGGPQSS 775
>03_06_0523 +
34499533-34499705,34499808-34499917,34500037-34500224,
34500984-34501451
Length = 312
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 2/95 (2%)
Frame = +3
Query: 213 VSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQPLDRKPEYSTAKEAFEK--CLKSGLTVFA 386
V +L+ K+ + V Y + + L +K E AF+K C + ++
Sbjct: 94 VDNLNGAKVLGRIVRVDHVSKYKKKEEEDEEELQKKREARGVCYAFQKGECNRGASCRYS 153
Query: 387 QGRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRK 491
R+A + S+ +W RH P +H+K
Sbjct: 154 HDEQRNANTGWGSKEESKARWEHDRHHEPPMSHKK 188
>06_01_0080 + 644021-645463
Length = 480
Score = 29.9 bits (64), Expect = 2.5
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +1
Query: 427 MTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSVAEGRSDAIPI 606
+T +GK GS +K+VH E + E D+ +SV + +++ +E +
Sbjct: 173 VTYIGKGGSGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLS 232
Query: 607 FLQDI 621
FL +I
Sbjct: 233 FLIEI 237
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 29.5 bits (63), Expect = 3.3
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +1
Query: 421 NAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSVAEGRSDAI 600
+A+ E+ ++ + DI++ H + +P KD+ V M + V G+S +
Sbjct: 381 DAVIEIPRNDTEYDIEIDHGIFSWELETTSPTLKDVELKVKRGMKVAICGMVGSGKSSLL 440
Query: 601 PIFLQDIPKL 630
L ++PKL
Sbjct: 441 SSILGEMPKL 450
>03_06_0153 -
32024787-32024892,32024997-32025079,32025159-32025978,
32026122-32026327,32026887-32026975,32027132-32027192,
32027297-32027416
Length = 494
Score = 29.5 bits (63), Expect = 3.3
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 237 LSSAFLSVKSDRSYFTYTQSLSQPLDRKPEYSTAKEAFEKCLKSGLTVFAQGRGRHAGAS 416
L S LS+ ++ S F ++ +++ E S+ E+ EKCLKS V + + G
Sbjct: 297 LVSVELSISNECSLFQSSEGSVSSCNKRRENSST-ESVEKCLKSEPLVHSSRKKVLKGND 355
Query: 417 SQCHDRSRKKWI 452
S+ S +W+
Sbjct: 356 SEVEFPSLSQWL 367
>02_05_0425 -
28845707-28846189,28846262-28846403,28846496-28846971,
28848817-28848848,28849429-28849572,28849770-28849841,
28850281-28850296
Length = 454
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -2
Query: 429 HGIEKRHRRGGRAPVRTRSARI*DIS 352
H + + RRGGRAPVR R A++ +S
Sbjct: 49 HRVFDQGRRGGRAPVRHRHAQLRQVS 74
>11_04_0050 - 12819929-12820468,12820606-12820824,12820900-12821118
Length = 325
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +3
Query: 615 GHPQAVPQEDHPARHRSYPGLSPRQPWLLQSGA-PPWTVSGP 737
G P+ P+E+ P + P + R P L + G+ PPW P
Sbjct: 26 GKPEEKPKEEAPPALPTRPTVRGRPPSLQRPGSPPPWVHRSP 67
>06_03_0157 +
17337641-17337896,17337975-17338082,17338643-17338908,
17339933-17340021,17340095-17340198,17340403-17340508,
17340600-17340675,17340772-17340883,17341719-17342250,
17343097-17343131,17343924-17343984,17344054-17344132,
17344266-17344349
Length = 635
Score = 28.3 bits (60), Expect = 7.7
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +3
Query: 159 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQ 305
+KL+ + +I+P + L FG + SAF + +D F Y QSL +
Sbjct: 232 IKLHSKLERKKMHRIIP--NRLTFGSVRSAFDDIDADDPDFLYIQSLGE 278
>05_02_0052 +
6124880-6124956,6125097-6125250,6125327-6125920,
6126344-6126757,6126835-6126846
Length = 416
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -3
Query: 584 PSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMALRRGTG 405
PS++ R+F+A T + +S + AA+ + C T + L P A RR +G
Sbjct: 97 PSSSSFRSFSAGTTTTTTSRDDNSSLMLAAAAASCHHQTTEVSSQILLPRPGQAARRSSG 156
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 28.3 bits (60), Expect = 7.7
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +3
Query: 312 DRKPEYSTAKEAFEKCLKSGLTVFAQGRGRHA 407
D K +Y+ EAF K LK G+ +Q RG+ A
Sbjct: 407 DNKEDYAKFYEAFSKNLKLGIHEDSQNRGKLA 438
>01_01_1169 + 9313135-9313332,9313496-9314229,9314933-9317036
Length = 1011
Score = 28.3 bits (60), Expect = 7.7
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 324 EYSTAKEAFEKCLKSGLTVFAQGRGRHAGASSQCHDRSRKKWIVARHQSRPYAHRKGCG 500
E TAK E + +V + GR +H A++ HD+ R+ + H + R G G
Sbjct: 543 EVMTAKCVEENFISLLGSVTSYGRHQHTAATTTGHDKIRRLSVHGSHMPQGQQSRSGGG 601
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,348,792
Number of Sequences: 37544
Number of extensions: 527328
Number of successful extensions: 1591
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1591
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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