Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_C04
(814 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28928-9|AAN63431.1| 471|Caenorhabditis elegans Hypothetical pr... 88 6e-18
Z46934-7|CAA87047.1| 472|Caenorhabditis elegans Hypothetical pr... 70 2e-12
AL032632-12|CAA21589.3| 333|Caenorhabditis elegans Hypothetical... 55 7e-08
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 29 4.0
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 29 4.0
Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein ( C.ele... 29 5.2
U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation fact... 29 5.2
Z77664-2|CAB01217.1| 643|Caenorhabditis elegans Hypothetical pr... 28 9.1
Z73970-5|CAA98248.1| 643|Caenorhabditis elegans Hypothetical pr... 28 9.1
>U28928-9|AAN63431.1| 471|Caenorhabditis elegans Hypothetical
protein C44B7.10 protein.
Length = 471
Score = 88.2 bits (209), Expect = 6e-18
Identities = 45/107 (42%), Positives = 63/107 (58%)
Frame = +1
Query: 391 GAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRK 570
G AATP PLL +++E + +L IK+ H+H E + +D RS SLF N+R
Sbjct: 60 GIAATPTPLLQSLSEHAVANNLNKIKLHHLHLEGATPWTAEGVRDRIRSNSLFTGHNLRA 119
Query: 571 SVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVSPPDNHGYCSLG 711
V G +D FL ++P LF + I+ + +LIQVSPPD G+CSLG
Sbjct: 120 CVNNGIADFNSCFLYEVPLLFRKGAIKLNASLIQVSPPDAFGFCSLG 166
Score = 44.0 bits (99), Expect = 1e-04
Identities = 20/34 (58%), Positives = 24/34 (70%)
Frame = +2
Query: 710 GTSVDCVRAALGNSKIXIAQVNVNMPXXFGEAII 811
GTSVD RAA+ NS + IA VN NMP FG+ +I
Sbjct: 166 GTSVDTARAAVTNSPLIIAMVNKNMPRTFGDGVI 199
>Z46934-7|CAA87047.1| 472|Caenorhabditis elegans Hypothetical
protein ZK1320.9 protein.
Length = 472
Score = 70.1 bits (164), Expect = 2e-12
Identities = 37/105 (35%), Positives = 57/105 (54%)
Frame = +1
Query: 397 AATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSV 576
A+ P LL A+ S +L +I++ H+ + P+ ++ SLF+ RK+V
Sbjct: 64 ASAPNVLLEALCRRVDSANLNNIRMSHLILSGNCPQFDPKYHGKIQNNSLFICPGNRKNV 123
Query: 577 AEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVSPPDNHGYCSLG 711
G +D PIFL ++P L+ + D ALI VSPPD G+C+LG
Sbjct: 124 NLGAADYTPIFLSEVPSLYTSGTLNVDFALITVSPPDELGFCTLG 168
>AL032632-12|CAA21589.3| 333|Caenorhabditis elegans Hypothetical
protein Y11D7A.1 protein.
Length = 333
Score = 54.8 bits (126), Expect = 7e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +1
Query: 541 SLFMAANVRKSVAEGRSDAIPIFLQDIPKLFHRKIIQPDIALIQVSPPDNHGYCSLG 711
SLF+ RK+V G +D PIFL ++P ++ + ALI VSPPD G+C+LG
Sbjct: 54 SLFICPGNRKNVKLGAADYTPIFLSEVPSVYTSGTLNVHFALITVSPPDELGFCTLG 110
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 675 DLDKSDVGLDDLPVEQLGDVLKEDGNGVG 589
D K DL EQL D EDGNG G
Sbjct: 472 DAQKPSTSSSDLTAEQLQDPTAEDGNGDG 500
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/29 (48%), Positives = 14/29 (48%)
Frame = -2
Query: 675 DLDKSDVGLDDLPVEQLGDVLKEDGNGVG 589
D K DL EQL D EDGNG G
Sbjct: 472 DAQKPSTSSSDLTAEQLQDPTAEDGNGDG 500
>Z12116-1|CAA78102.1| 402|Caenorhabditis elegans protein (
C.elegans mRNA for eIF-4A homologue. ).
Length = 402
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -3
Query: 602 GMASERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMA 423
G E+PSA R D+ SG A+FSV I + DP VMA
Sbjct: 46 GFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI-DHEDPHVQALVMA 104
Query: 422 LRR 414
R
Sbjct: 105 PTR 107
>U13876-3|AAA21170.1| 402|Caenorhabditis elegans Initiation factor
protein 1, isoforma protein.
Length = 402
Score = 28.7 bits (61), Expect = 5.2
Identities = 20/63 (31%), Positives = 24/63 (38%)
Frame = -3
Query: 602 GMASERPSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMA 423
G E+PSA R D+ SG A+FSV I + DP VMA
Sbjct: 46 GFGFEKPSAIQKRAIVPCTTGKDVIAQAQSGTGKTATFSVSILQRI-DHEDPHVQALVMA 104
Query: 422 LRR 414
R
Sbjct: 105 PTR 107
>Z77664-2|CAB01217.1| 643|Caenorhabditis elegans Hypothetical
protein C29A12.6 protein.
Length = 643
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +3
Query: 159 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQP 308
+ ++ RM+ T I P+ + + + +S + + K+ RSY T T++ S+P
Sbjct: 329 IPMSTTRRMTTTT-IRPKTTKKYLSRSTSKYDAKKTTRSYQTTTRTTSKP 377
>Z73970-5|CAA98248.1| 643|Caenorhabditis elegans Hypothetical
protein C29A12.6 protein.
Length = 643
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/50 (28%), Positives = 29/50 (58%)
Frame = +3
Query: 159 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQP 308
+ ++ RM+ T I P+ + + + +S + + K+ RSY T T++ S+P
Sbjct: 329 IPMSTTRRMTTTT-IRPKTTKKYLSRSTSKYDAKKTTRSYQTTTRTTSKP 377
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,124,338
Number of Sequences: 27780
Number of extensions: 416186
Number of successful extensions: 1071
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1998381620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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