Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_B24
         (833 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyce...    59   7e-10
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    31   0.27 
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    27   2.5  
SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    26   5.7  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    26   5.7  
SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    26   7.6  
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   7.6  

>SPAC22A12.09c |sap114||splicing factor Sap114|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 481

 Score = 59.3 bits (137), Expect = 7e-10
 Identities = 39/128 (30%), Positives = 55/128 (42%)
 Frame = +3

Query: 312 DPYHAYYQHKVREIKEGKVPEPTAPPTMPSGQQRMGLAPATAARQQELLKXXXXXXXXXX 491
           DPYH YYQHK+ E +EGK+                  A   + ++   L           
Sbjct: 80  DPYHPYYQHKLTEAREGKLKSH---------------ATGLSTQKTSTLARPIQKPIEAT 124

Query: 492 XXXXXDFEFIADPPSISALELDIVKLTAQFVARNGRQFLTDLMXKXERXXXFXFLRPXXF 671
                 + F    PSIS+L+LD+++LTA++ A  G  FL  L  K      F FL+P   
Sbjct: 125 IPAPSPYLFSEPLPSISSLDLDVLRLTARYAAVRGSSFLVSLSQKEWNNTQFDFLKPNNA 184

Query: 672 LCPNXSRV 695
           L P   R+
Sbjct: 185 LYPYFMRI 192



 Score = 56.4 bits (130), Expect = 5e-09
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = +2

Query: 194 VRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLNS 307
           +R I+DK+AS+VARNGP FE +IRQNE  N KF FL++
Sbjct: 41  IREIIDKSASYVARNGPAFEEKIRQNEQANTKFAFLHA 78


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 30.7 bits (66), Expect = 0.27
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 202 ISDFRWWINNANDWRGWWRRIFRDL 128
           IS F+W  NN NDW    +  FRD+
Sbjct: 189 ISKFKWDSNNNNDWSSLMKDCFRDV 213


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/38 (26%), Positives = 20/38 (52%)
 Frame = +2

Query: 221 SFVARNGPEFEARIRQNELGNPKFNFLNSGGSLPCLLS 334
           SF+++ G + + +   N+   P+     SGG  P +L+
Sbjct: 102 SFISKTGLKIDTKSVLNDTDGPRLGIAISGGGFPAMLT 139


>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = -1

Query: 596 TVSGDKLRS*LHYVEFQSRYRRWISD 519
           T SG ++    H+ EF++RYR+ ++D
Sbjct: 155 TRSGIRVHHLYHWAEFEARYRKNVAD 180


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 219  PALWLVMVLNLKLESDRMSWATQSSTSLIQGDPYHAY 329
            P +W+ +  +L   SDR+  + Q  T L+  DP +AY
Sbjct: 1500 PEMWIKLA-DLCRRSDRLKLSNQCLTYLMGRDPSNAY 1535


>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +3

Query: 267 RMSWATQSSTSLIQGDPYHAYYQHKVREIKEGKVPEPTAPPTMPS 401
           ++ W  +   SL  G+PY  +  H+  E+K G    P  P T P+
Sbjct: 77  KIDWLNEPKESLTPGNPYVIW--HRKPEMKVG---SPYTPSTRPA 116


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 181 INNANDWRGWWRRIFRDLQRLPRW*HYIYRWHC 83
           I N ++  G+  R+F DLQ   ++ H    +HC
Sbjct: 340 IKNIHELLGFLGRLFMDLQDCEKFHHDYTEYHC 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,817
Number of Sequences: 5004
Number of extensions: 46968
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)