Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_B24
(833 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein. 75 6e-14
AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp (sp... 75 6e-14
AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical ... 36 0.036
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 31 1.0
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 31 1.0
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 31 1.0
U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein. 31 1.0
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 31 1.0
Z69383-13|CAA93404.2| 181|Caenorhabditis elegans Hypothetical p... 30 2.3
U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein. 28 9.5
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo... 28 9.5
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo... 28 9.5
>U09415-1|AAA82164.1| 655|Caenorhabditis elegans Ceprp21 protein.
Length = 655
Score = 74.9 bits (176), Expect = 6e-14
Identities = 43/117 (36%), Positives = 59/117 (50%)
Frame = +3
Query: 312 DPYHAYYQHKVREIKEGKVPEPTAPPTMPSGQQRMGLAPATAARQQELLKXXXXXXXXXX 491
DPYHAYY+ V + EG+V P P + ++ P+
Sbjct: 73 DPYHAYYKKMVYDFSEGRVEAPKVPQAVKEHVKKAEFVPSAPPPA--------------- 117
Query: 492 XXXXXDFEFIADPPSISALELDIVKLTAQFVARNGRQFLTDLMXKXERXXXFXFLRP 662
+EF ADP +I+A +LD+++L A FVARNGRQFLT LM + R F FL+P
Sbjct: 118 ------YEFSADPSTINAYDLDLIRLVALFVARNGRQFLTQLMTREARNYQFDFLKP 168
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +2
Query: 194 VRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLN 304
+R IVDKTA F A+NG +FE +IR+ E NPKFNFL+
Sbjct: 34 IRTIVDKTARFAAKNGVDFENKIREKEAKNPKFNFLS 70
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 200 NIVDKTASFVARNGPEFEARIRQNELGNPKFNFL 301
+++ A FVARNG +F ++ E N +F+FL
Sbjct: 133 DLIRLVALFVARNGRQFLTQLMTREARNYQFDFL 166
>AF106576-5|AAC78179.1| 655|Caenorhabditis elegans Yeast prp
(splicing factor) relatedprotein 21 protein.
Length = 655
Score = 74.9 bits (176), Expect = 6e-14
Identities = 43/117 (36%), Positives = 59/117 (50%)
Frame = +3
Query: 312 DPYHAYYQHKVREIKEGKVPEPTAPPTMPSGQQRMGLAPATAARQQELLKXXXXXXXXXX 491
DPYHAYY+ V + EG+V P P + ++ P+
Sbjct: 73 DPYHAYYKKMVYDFSEGRVEAPKVPQAVKEHVKKAEFVPSAPPPA--------------- 117
Query: 492 XXXXXDFEFIADPPSISALELDIVKLTAQFVARNGRQFLTDLMXKXERXXXFXFLRP 662
+EF ADP +I+A +LD+++L A FVARNGRQFLT LM + R F FL+P
Sbjct: 118 ------YEFSADPSTINAYDLDLIRLVALFVARNGRQFLTQLMTREARNYQFDFLKP 168
Score = 54.0 bits (124), Expect = 1e-07
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = +2
Query: 194 VRNIVDKTASFVARNGPEFEARIRQNELGNPKFNFLN 304
+R IVDKTA F A+NG +FE +IR+ E NPKFNFL+
Sbjct: 34 IRTIVDKTARFAAKNGVDFENKIREKEAKNPKFNFLS 70
Score = 29.1 bits (62), Expect = 4.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +2
Query: 200 NIVDKTASFVARNGPEFEARIRQNELGNPKFNFL 301
+++ A FVARNG +F ++ E N +F+FL
Sbjct: 133 DLIRLVALFVARNGRQFLTQLMTREARNYQFDFL 166
>AC006605-3|AAK85442.1| 933|Caenorhabditis elegans Hypothetical
protein C07H6.4 protein.
Length = 933
Score = 35.9 bits (79), Expect = 0.036
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 203 IVDKTASFVARNGPEFEARIRQNELGNPKFNFL 301
++D+ A +V GP+FEA I E NP F FL
Sbjct: 367 VMDRMAVYVVTEGPQFEAMICAEEFQNPMFQFL 399
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 194 VRNIVDKTASFVARNGPEFEARIRQNELGN-PKFNFL 301
+ +I++KTASF+ NG + E I+ + N +F FL
Sbjct: 79 LHHIIEKTASFIVANGTQMEIVIKAKQRNNAEQFGFL 115
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 194 VRNIVDKTASFVARNGPEFEARIRQNELGN-PKFNFL 301
+ +I++KTASF+ NG + E I+ + N +F FL
Sbjct: 163 LHHIIEKTASFIVANGTQMEIVIKAKQRNNAEQFGFL 199
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 194 VRNIVDKTASFVARNGPEFEARIRQNELGN-PKFNFL 301
+ +I++KTASF+ NG + E I+ + N +F FL
Sbjct: 167 LHHIIEKTASFIVANGTQMEIVIKAKQRNNAEQFGFL 203
>U06933-1|AAA64938.1| 551|Caenorhabditis elegans CeSWAP protein.
Length = 551
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 194 VRNIVDKTASFVARNGPEFEARIRQNELGN-PKFNFL 301
+ +I++KTASF+ NG + E I+ + N +F FL
Sbjct: 163 LHHIIEKTASFIVANGTQMEIVIKAKQRNNAEQFGFL 199
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 31.1 bits (67), Expect = 1.0
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 194 VRNIVDKTASFVARNGPEFEARIRQNELGN-PKFNFL 301
+ +I++KTASF+ NG + E I+ + N +F FL
Sbjct: 163 LHHIIEKTASFIVANGTQMEIVIKAKQRNNAEQFGFL 199
>Z69383-13|CAA93404.2| 181|Caenorhabditis elegans Hypothetical
protein F13E9.8 protein.
Length = 181
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = +2
Query: 233 RNGPEFEARIRQNELGNPKFNFLNSGGSLPCLLSA*SQRDQRGKSSRTNCTTNYAIRTAT 412
+N F+A IR N + + N N L + S Q + K++ NY + T
Sbjct: 66 QNKTAFDAEIRTN-ITSVIGNLANVNTQLNSIFSNKDQTHDQVKTAIDGVRQNYPVEVDT 124
Query: 413 NGSRSSHSGPPAGAPQG 463
+H GPP G P G
Sbjct: 125 L-MHLAHPGPPHGGPGG 140
>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
Length = 1379
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +2
Query: 404 TATNGSRSSHSGPPAGAPQGGCSCRTASAARPPSRFRIYR*STVYIGSGTRHSEVNCAIC 583
+A++ S SS S P G P G C + R + Y I SG +S ++
Sbjct: 2 SASSTSSSSTSCPEGGEPSGSCKSSDEGESTLKKRMQQYG-----IASGYANSSISTLDR 56
Query: 584 RQKRSSVLNG 613
Q +S LNG
Sbjct: 57 SQYQSLPLNG 66
>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform a protein.
Length = 1376
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +2
Query: 404 TATNGSRSSHSGPPAGAPQGGCSCRTASAARPPSRFRIYR*STVYIGSGTRHSEVNCAIC 583
+A++ S SS S P G P G C + R + Y I SG +S ++
Sbjct: 2 SASSTSSSSTSCPEGGEPSGSCKSSDEGESTLKKRMQQYG-----IASGYANSSISTLDR 56
Query: 584 RQKRSSVLNG 613
Q +S LNG
Sbjct: 57 SQYQSLPLNG 66
>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
partitioningof cytoplasm protein 3, isoform b protein.
Length = 1379
Score = 27.9 bits (59), Expect = 9.5
Identities = 21/70 (30%), Positives = 30/70 (42%)
Frame = +2
Query: 404 TATNGSRSSHSGPPAGAPQGGCSCRTASAARPPSRFRIYR*STVYIGSGTRHSEVNCAIC 583
+A++ S SS S P G P G C + R + Y I SG +S ++
Sbjct: 2 SASSTSSSSTSCPEGGEPSGSCKSSDEGESTLKKRMQQYG-----IASGYANSSISTLDR 56
Query: 584 RQKRSSVLNG 613
Q +S LNG
Sbjct: 57 SQYQSLPLNG 66
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,500,227
Number of Sequences: 27780
Number of extensions: 290766
Number of successful extensions: 1059
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1058
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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