Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_B19
         (789 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...   198   1e-51
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    34   0.027
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    25   9.4  

>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score =  198 bits (482), Expect = 1e-51
 Identities = 98/176 (55%), Positives = 121/176 (68%)
 Frame = +1

Query: 19  VEKTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVAGFQLAFSRREYSKSHTGXW 198
           VEKTGHSGTLDPKVTGCLI+C DRATRLVKSQQ+AGKEYV   +L  S        +   
Sbjct: 90  VEKTGHSGTLDPKVTGCLIICNDRATRLVKSQQSAGKEYVCVLRLHDSVEGERNVASAIE 149

Query: 199 RSCVELYSRGPRLISAVKRQLRVRTVYDSKLLDFDQDKNIGVFWVSCEAGSYIRTMCVHL 378
                L+ R P LISAVKRQLR+R++Y+SKL++FD ++N+ VFW SCEAG+Y+RT+CVHL
Sbjct: 150 TLTGALFQRPP-LISAVKRQLRIRSIYESKLIEFDNERNLAVFWASCEAGTYMRTLCVHL 208

Query: 379 GLMLGVXXXMIELXXXRSGIXGXKEGMVXMHDILXAXXSYENXXXXTYLXXXXXPL 546
           GL+LGV   M EL   RSG     + +V MHD+L A   Y+N    +YL     PL
Sbjct: 209 GLLLGVGGHMQELRRVRSGCLSENDDIVTMHDVLDAQWIYDNTRDESYLRRVIRPL 264


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 33.9 bits (74), Expect = 0.027
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +1

Query: 25  KTGHSGTLDPKVTGCLIVCIDRATRLVKSQQNAGKEYVA 141
           K GH GTLDP  +G L+V +   T+ + S  +  K Y A
Sbjct: 107 KIGHGGTLDPLASGVLVVGLGTGTKQLSSLLSCMKTYRA 145


>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 175 SKSHTGXWRSCVELYSRGPRLISAVKRQL 261
           S  HT  W+ C + Y+    L+S +K+ L
Sbjct: 6   SCEHTVSWKLCEQKYNEATTLLSKLKKLL 34


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,167,833
Number of Sequences: 5004
Number of extensions: 41026
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)