Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_B17
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.040
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.070
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    30   0.28 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   0.66 
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    28   1.5  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   2.6  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.1  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.1 bits (72), Expect = 0.040
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = -3

Query: 422 PPPPPXXGEKXKXXXPPPPPXXXKK 348
           PPPPP   E      PPPPP   KK
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKK 35



 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -3

Query: 467 PPPPRXXXXXXXXXTPPPPPXXGEKXKXXXP 375
           PPPP           PPPPP   +K K   P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +3

Query: 465 GXPPPPXXXKTPPPXXGGGXXPXPPPXXG 551
           G PPPP     PPP       P PPP  G
Sbjct: 7   GNPPPPP----PPPGFEPPSQPPPPPPPG 31



 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = -3

Query: 467 PPPPRXXXXXXXXXTPPPPPXXGEKXKXXXPPP 369
           PPPP           PPPPP  G   K     P
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTP 41



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +3

Query: 171 PPXXKXPPXXXKGXXPPPPQXXFXPPPXFLKXK 269
           PP    PP    G   PP Q    PPP ++K +
Sbjct: 5   PPGNPPPPPPPPG-FEPPSQPPPPPPPGYVKKR 36


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.070
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = +3

Query: 462 GGXPPPPXXXKTPPPXXGGGXXPXPPPXXGXAA 560
           GG PPPP     PP   G G  P PPP    +A
Sbjct: 759 GGPPPPPP----PPGVAGAGPPPPPPPPPAVSA 787



 Score = 31.5 bits (68), Expect = 0.12
 Identities = 17/53 (32%), Positives = 17/53 (32%)
 Frame = -3

Query: 521 PPPXXXXXXXXXXXXXGAPPPPRXXXXXXXXXTPPPPPXXGEKXKXXXPPPPP 363
           PPP               PPP            PPPPP  G       PPPPP
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPA-----PIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 29.5 bits (63), Expect = 0.50
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = -3

Query: 521 PPPXXXXXXXXXXXXXGAPPPPRXXXXXXXXXTPPPPPXXGEKXKXXXPPPP 366
           PPP               P PP           PPPP   G       PPPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = +3

Query: 474 PPPXXXKTPPPXXGGGXXPXPPPXXGXAAP 563
           P P     P P  GG   P PPP    A P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGP 775



 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 474 PPPXXXKTPPPXXGGGXXPXPPPXXGXA 557
           P P     PPP    G  P PPP  G A
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVA 771



 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = -3

Query: 467 PPPPRXXXXXXXXXTPPPPPXXGEKXKXXXPPPPP 363
           PPPP           P P P          PPPPP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/34 (32%), Positives = 11/34 (32%)
 Frame = -3

Query: 467 PPPPRXXXXXXXXXTPPPPPXXGEKXKXXXPPPP 366
           PPPP           PPPPP           P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.3 bits (65), Expect = 0.28
 Identities = 14/39 (35%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
 Frame = +3

Query: 450  PXGGGGXPPPPXXXKTPP-PXXGGGXXPXPPPXXGXAAP 563
            P    G PP P   + PP P    G  P PPP      P
Sbjct: 1182 PKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +3

Query: 147 NGKXQXXXPPXXKXPPXXXKGXXPPPPQXXFXPPP 251
           NG      PP    P     G  P PPQ    PPP
Sbjct: 329 NGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/53 (28%), Positives = 15/53 (28%)
 Frame = -3

Query: 521 PPPXXXXXXXXXXXXXGAPPPPRXXXXXXXXXTPPPPPXXGEKXKXXXPPPPP 363
           PPP               PPPP             PP   G       PPPPP
Sbjct: 293 PPPSSRVSAAALAANKKRPPPPPPPSRRNRGK---PPIGNGSSNSSLPPPPPP 342



 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
 Frame = +1

Query: 112 PPPTLGXNXXGXMGKXKXXGPLXKXPPPXXXK--GXXPPPPKXXXTXPP 252
           PPP+        +G       L   PPP      G  P PP+     PP
Sbjct: 315 PPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPP 363


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 10/30 (33%), Positives = 12/30 (40%)
 Frame = -1

Query: 157 FFPFXPXCFXPKWGEAGTRXXXXXTFYDTD 68
           F+P    C    WG   T       FYD+D
Sbjct: 179 FYPLGKNCLQKLWGRVETNMDNTTAFYDSD 208


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = -1

Query: 562 GAAXPXXGGGXGXXPPPXXGGGVFXXXGGGG 470
           G      GGG G  PP   G G F   GG G
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGGFGGFGGEG 217


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/35 (37%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
 Frame = +3

Query: 471  PPPPXXXKTP----PPXXGGGXXPXPPPXXGXAAP 563
            PPPP     P    PP   G     PPP    +AP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAP 1741


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,750,109
Number of Sequences: 5004
Number of extensions: 31081
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)