Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_B13
         (1196 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0005 + 11568545-11569119,11569179-11569191                       33   0.34 
07_01_0080 + 587674-588510                                             31   1.8  
01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225           29   7.2  
08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,336...    29   9.6  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    29   9.6  

>01_03_0005 + 11568545-11569119,11569179-11569191
          Length = 195

 Score = 33.5 bits (73), Expect = 0.34
 Identities = 22/69 (31%), Positives = 23/69 (33%)
 Frame = -1

Query: 926 GGGGGXXXXXGGPPPXXXXXXGGGXXKXXXXXXXPPPXKXFXXGXXGGGXFXPXKXXXXX 747
           GGGGG       PPP      GGG          PPP      G  GGG +         
Sbjct: 81  GGGGGGTVMYTSPPPPYS-GGGGGSSTGGGGIYYPPPT---GGGGGGGGGWQQGGGGGGA 136

Query: 746 XGETPPXNP 720
               PP NP
Sbjct: 137 YPTPPPPNP 145


>07_01_0080 + 587674-588510
          Length = 278

 Score = 31.1 bits (67), Expect = 1.8
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +3

Query: 846 FXXXPPXXXXXXXGGXPPXXXXPPPPPP 929
           F   PP        G PP    PPPPPP
Sbjct: 88  FRRPPPPPPPPPSSGSPPPPPPPPPPPP 115



 Score = 29.9 bits (64), Expect = 4.1
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = +2

Query: 857 PPPXXXXXXGGXPPXXXKXPPPPP 928
           PPP      G  PP     PPPPP
Sbjct: 93  PPPPPPPSSGSPPPPPPPPPPPPP 116


>01_01_0553 - 4067921-4068180,4068437-4068455,4069101-4070225
          Length = 467

 Score = 29.1 bits (62), Expect = 7.2
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = -2

Query: 928 GGGGGGFXXXGGXPPXXXXXXXGGXXKKXXXXGXXPPP 815
           GGGGGGF      PP        G           PPP
Sbjct: 23  GGGGGGFSPTAAKPPPPPSPRANGTAAAAKPSASPPPP 60


>08_01_0003 + 30085-30195,30289-30365,31080-31136,31668-33560,
            33643-34147,34250-34358,34436-34548,34619-34806,
            35481-36129,36169-36691,36760-36911,37042-37141,
            37301-37416
          Length = 1530

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 15/35 (42%), Positives = 16/35 (45%)
 Frame = +3

Query: 525  SQSQPQKXPRKPLXRGPXXEKFXPPPLPXFXPQXP 629
            S S P   P  PL  GP  +   PPPLP   P  P
Sbjct: 1176 SPSLPPPPPPPPLPSGPPPQP-APPPLPIQPPPIP 1209


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 28.7 bits (61), Expect = 9.6
 Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
 Frame = +1

Query: 784  PPXXPXKKXFXGGGXFXXXXFFXXPPPXXXXXXGG--GPPXXXKXPPPP 924
            PP  P    F GG           PPP      GG  GPP     P PP
Sbjct: 1160 PPAPPPPAGFRGGTPPPNAHGGVAPPPPPPRGHGGVGGPPTPPGAPAPP 1208


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,328,898
Number of Sequences: 37544
Number of extensions: 550782
Number of successful extensions: 6538
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4385
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 3654850728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)