Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_B13
(1196 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 30 3.7
Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical pr... 30 3.7
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 30 3.7
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 30 3.7
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 30 3.7
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 29 4.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 29 4.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 29 4.9
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ... 29 4.9
Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical p... 29 6.5
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = -1
Query: 926 GGGGGXXXXXGGPPPXXXXXXGGGXXKXXXXXXXPPPXKXFXXGXXGGG 780
GGGGG GG GGG PPP G GGG
Sbjct: 23 GGGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGG 71
Score = 29.9 bits (64), Expect = 3.7
Identities = 17/49 (34%), Positives = 17/49 (34%)
Frame = -1
Query: 926 GGGGGXXXXXGGPPPXXXXXXGGGXXKXXXXXXXPPPXKXFXXGXXGGG 780
GGGGG GG GGG PPP G GGG
Sbjct: 80 GGGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPPACGGGCGGGGGG 128
>Z70204-1|CAA94111.1| 643|Caenorhabditis elegans Hypothetical
protein C11G6.1 protein.
Length = 643
Score = 29.9 bits (64), Expect = 3.7
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = -1
Query: 272 PGXAGSPKKRPXXRVSGXFFSXQKVSXKGLRGAPKKPK--GWXFXXERXXFPPKXA 111
PG +P P R KGL G PKKPK G + PPK A
Sbjct: 364 PGTGSNPGSAPSSRPGSSMSIGTPTKVKGLPGRPKKPKPEGVVTVPKPKGRPPKKA 419
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 780 PPPXXXXXKXFXGGGXXPXXXXFXXXPPXXXXXXXGGXPPXXXXPPPPPP 929
PPP G G P PP G PP PPPPP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT----GSPPPPPTGSPPPPP 284
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 780 PPPXXXXXKXFXGGGXXPXXXXFXXXPPXXXXXXXGGXPPXXXXPPPPPP 929
PPP G G P PP G PP PPPPP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT----GSPPPPPTGSPPPPP 305
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.9 bits (64), Expect = 3.7
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 780 PPPXXXXXKXFXGGGXXPXXXXFXXXPPXXXXXXXGGXPPXXXXPPPPPP 929
PPP G G P PP G PP PPPPP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRT----GSPPPPPTGSPPPPP 290
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 780 PPPXXXXXKXFXGGGXXPXXXXFXXXPPXXXXXXXGGXPPXXXXPPPPPP 929
PPP GG P PP PP PPPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPP 775
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 780 PPPXXXXXKXFXGGGXXPXXXXFXXXPPXXXXXXXGGXPPXXXXPPPPPP 929
PPP GG P PP PP PPPPPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPP 775
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/50 (32%), Positives = 16/50 (32%)
Frame = +3
Query: 780 PPPXXXXXKXFXGGGXXPXXXXFXXXPPXXXXXXXGGXPPXXXXPPPPPP 929
PPP GG P PP PP PPPPPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPG--GLPPISGGPPPPPPPPGGCPPPPPPP 358
>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
protein F59E12.9 protein.
Length = 1621
Score = 29.5 bits (63), Expect = 4.9
Identities = 16/49 (32%), Positives = 17/49 (34%)
Frame = +3
Query: 783 PPXXXXXKXFXGGGXXPXXXXFXXXPPXXXXXXXGGXPPXXXXPPPPPP 929
PP + GG P PP GG PP PPP PP
Sbjct: 1560 PPPHGGMNGWRGGPPPPRGGSHCQGPPPLM----GGPPPRLGMPPPGPP 1604
>Z82266-12|CAB05185.2| 1080|Caenorhabditis elegans Hypothetical
protein F23B2.11 protein.
Length = 1080
Score = 29.1 bits (62), Expect = 6.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +2
Query: 212 KKTYPKPFXKAFFXGNPPNXVYP 280
KKT+P+P K F G PP+ P
Sbjct: 539 KKTFPEPKFKKVFLGRPPHGFLP 561
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,076,694
Number of Sequences: 27780
Number of extensions: 327369
Number of successful extensions: 2720
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1722
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3286854270
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -