Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_B09
         (737 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    63   5e-11
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    60   2e-10
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.074
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.1  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 28/39 (71%), Positives = 32/39 (82%)
 Frame = +3

Query: 201 HVINLRRTWEKLVLAARAVVTIXNPADVFVISSRXFGQR 317
           H+INL +TWEKLVLAAR + TI NPADV VISSR +G R
Sbjct: 50  HIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHR 88



 Score = 47.2 bits (107), Expect = 2e-06
 Identities = 18/39 (46%), Positives = 30/39 (76%)
 Frame = +1

Query: 82  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADG 198
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDG 48


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 25/39 (64%), Positives = 32/39 (82%)
 Frame = +3

Query: 201 HVINLRRTWEKLVLAARAVVTIXNPADVFVISSRXFGQR 317
           H++NL +TWEKLVLAAR + TI NPADV V+S+R +G R
Sbjct: 49  HILNLGKTWEKLVLAARVIATIENPADVCVVSTRTYGHR 87



 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 18/43 (41%), Positives = 32/43 (74%)
 Frame = +1

Query: 70  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADG 198
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDG 47


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.3 bits (70), Expect = 0.074
 Identities = 13/29 (44%), Positives = 13/29 (44%)
 Frame = +2

Query: 626 GGSPPXPPRGXXGXXXXPPPXPPXXXXGG 712
           G  PP PP G  G    PPP PP     G
Sbjct: 760 GPPPPPPPPGVAGAGPPPPPPPPPAVSAG 788



 Score = 30.3 bits (65), Expect = 0.30
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = +2

Query: 518 PPXKFGXLXSPXXXXXPPXXXXXGGGXXPXKXXGXXGGSPPXPP 649
           PP       +P     PP     GG   P    G  G  PP PP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/28 (39%), Positives = 12/28 (42%)
 Frame = +1

Query: 442 PXPKPXPLXGXSXXPXPGXGXGQXKPPP 525
           P P P P+ G    P P  G     PPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPP 777


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 633 PPPXXPGXXXGXXXPPPPXP 692
           PPP  PG       PPPP P
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 2.8
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 635 PPXPPRGXXGXXXXPPPXPP 694
           PP PP G       PPP PP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 25.8 bits (54), Expect = 6.4
 Identities = 10/23 (43%), Positives = 10/23 (43%)
 Frame = +2

Query: 626 GGSPPXPPRGXXGXXXXPPPXPP 694
           G  PP PP         PPP PP
Sbjct: 7   GNPPPPPPPPGFEPPSQPPPPPP 29


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +2

Query: 566 PPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPP 685
           PP       G  P    G     PP PPR        PPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGR-SAPPPPPPRSAPSTGRQPPP 378



 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/50 (26%), Positives = 13/50 (26%)
 Frame = -3

Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPPP 586
           PP       P    G         P  PR    G  P  P       PPP
Sbjct: 316 PPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,502,493
Number of Sequences: 5004
Number of extensions: 44301
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)