Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_B09
(737 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical pr... 62 3e-10
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 39 0.004
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 39 0.004
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 39 0.004
AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical... 36 0.040
AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical ... 33 0.16
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.28
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.28
Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical pr... 32 0.37
L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein. 32 0.37
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 32 0.37
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 32 0.37
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 32 0.37
Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical pr... 31 0.85
AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein. 31 0.85
AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated... 31 0.85
AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated... 31 0.85
AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen prot... 30 1.5
Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 29 2.6
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 29 2.6
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 27 3.4
U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protei... 29 3.4
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 29 3.4
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 29 3.4
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 27 3.5
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 27 4.5
Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical pr... 29 4.5
Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical pr... 29 4.5
AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein. 29 4.5
Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical pr... 28 6.0
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 28 6.0
AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical ... 28 6.0
AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical ... 28 6.0
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 7.9
Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical pr... 28 7.9
V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein ( Caeno... 28 7.9
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 28 7.9
J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein ( C.ele... 28 7.9
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 7.9
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 7.9
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z37983-1|CAA86061.1| 276|Caenorhabditis elegans Hypothetical
protein B0393.1 protein.
Length = 276
Score = 62.5 bits (145), Expect = 3e-10
Identities = 29/45 (64%), Positives = 33/45 (73%)
Frame = +1
Query: 64 MSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADG 198
MSGG AL EEDV K+LA HLG+ N+NFQM+ YVYKRR DG
Sbjct: 1 MSGGAAHSALTEEDVMKLLATQAHLGSTNLNFQMQQYVYKRRFDG 45
Score = 56.8 bits (131), Expect = 1e-08
Identities = 22/39 (56%), Positives = 33/39 (84%)
Frame = +3
Query: 201 HVINLRRTWEKLVLAARAVVTIXNPADVFVISSRXFGQR 317
++IN+++TWEKL+LAARA+ + NPADV V+S+R + QR
Sbjct: 47 NIINVKKTWEKLLLAARAIAAVENPADVVVVSARPYAQR 85
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Frame = +2
Query: 518 PPXKFGXLXSPXXXXXPPXXXXXGGGXXPXKXXGXX--GGSPPXPPRGXXGXXXXPPPXP 691
PP G P PP GG P G G PP PP G PPP P
Sbjct: 720 PPITGGPPPPPPPGGLPPIT---GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 692 PXXXXGGXXXPGXGG 736
P GG P G
Sbjct: 777 PGGFKGGPPPPPPPG 791
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXG--GXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPPP 586
PP G PP G GG P P G PP P F G PPP
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Frame = +2
Query: 566 PPXXXXXGGGXXPXKXXGXX----GGSPPXPPRGXXGXXXXPPPXPPXXXXGGXXXP 724
PP GG P G GG PP PP G PP PP G P
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGX---GGEPPXXPXXFXGXXPPPXXXXXGG 565
PP G PP G P P GG G PP P G PPP GG
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 587 GGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPP 694
GG P GG PP PP G PP PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 746
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPP 589
PP G PP GG P P G GG PP P P
Sbjct: 752 PPISGGPPPPPPPPGGCP--PPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Frame = +2
Query: 518 PPXKFGXLXSPXXXXXPPXXXXXGGGXXPXKXXGXX--GGSPPXPPRGXXGXXXXPPPXP 691
PP G P PP GG P G G PP PP G PPP P
Sbjct: 720 PPITGGPPPPPPPGGLPPIT---GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 776
Query: 692 PXXXXGGXXXPGXGG 736
P GG P G
Sbjct: 777 PGGFKGGPPPPPPPG 791
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXG--GXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPPP 586
PP G PP G GG P P G PP P F G PPP
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 787
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Frame = +2
Query: 566 PPXXXXXGGGXXPXKXXGXX----GGSPPXPPRGXXGXXXXPPPXPPXXXXGGXXXP 724
PP GG P G GG PP PP G PP PP G P
Sbjct: 716 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGX---GGEPPXXPXXFXGXXPPPXXXXXGG 565
PP G PP G P P GG G PP P G PPP GG
Sbjct: 720 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 779
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 587 GGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPP 694
GG P GG PP PP G PP PP
Sbjct: 711 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 746
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPP 589
PP G PP GG P P G GG PP P P
Sbjct: 752 PPISGGPPPPPPPPGGCP--PPPPPPPPGGFKGGPPPPPPPGMFAPMAP 798
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 38.7 bits (86), Expect = 0.004
Identities = 25/75 (33%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Frame = +2
Query: 518 PPXKFGXLXSPXXXXXPPXXXXXGGGXXPXKXXGXX--GGSPPXPPRGXXGXXXXPPPXP 691
PP G P PP GG P G G PP PP G PPP P
Sbjct: 303 PPITGGPPPPPPPGGLPPIT---GGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPP 359
Query: 692 PXXXXGGXXXPGXGG 736
P GG P G
Sbjct: 360 PGGFKGGPPPPPPPG 374
Score = 35.1 bits (77), Expect = 0.052
Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXG--GXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPPP 586
PP G PP G GG P P G PP P F G PPP
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGGFKGGPPPP 370
Score = 31.9 bits (69), Expect = 0.49
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Frame = +2
Query: 566 PPXXXXXGGGXXPXKXXGXX----GGSPPXPPRGXXGXXXXPPPXPPXXXXGGXXXP 724
PP GG P G GG PP PP G PP PP G P
Sbjct: 299 PPGLPPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
Score = 31.5 bits (68), Expect = 0.64
Identities = 20/60 (33%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGX---GGEPPXXPXXFXGXXPPPXXXXXGG 565
PP G PP G P P GG G PP P G PPP GG
Sbjct: 303 PPITGGPPPPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPPPPPPPGG 362
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/36 (38%), Positives = 14/36 (38%)
Frame = +2
Query: 587 GGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPP 694
GG P GG PP PP G PP PP
Sbjct: 294 GGPPPPPGLPPITGGPPPPPPPGGLPPITGGPPPPP 329
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 16/49 (32%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPP 589
PP G PP GG P P G GG PP P P
Sbjct: 335 PPISGGPPPPPPPPGGCP--PPPPPPPPGGFKGGPPPPPPPGMFAPMAP 381
>AF003151-19|AAK18922.1| 988|Caenorhabditis elegans Hypothetical
protein D1007.7 protein.
Length = 988
Score = 35.5 bits (78), Expect = 0.040
Identities = 28/105 (26%), Positives = 33/105 (31%), Gaps = 3/105 (2%)
Frame = +1
Query: 418 PXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPKIWGXXFPXKXXXPPXXGXXXGGX 597
P + G+ P P P + P G KPPP ++ F PP G G
Sbjct: 709 PPGIPGYPPAPPPPGVGPPPPQGIPPMGFDPNKPPPPMFQQGF-NAGAPPPPFGRGAGPM 767
Query: 598 XPXKXXXXXGXF---PPXXXPGXXGXXXXPPPXPPXXXXGGXXXP 723
G PP G G PPP P GG P
Sbjct: 768 SSFPPPPRGGMHHMPPPPSFRGGRGGHGGPPP-PHFDRRGGGGPP 811
>AL032652-4|CAB63398.1| 486|Caenorhabditis elegans Hypothetical
protein Y63D3A.5 protein.
Length = 486
Score = 33.5 bits (73), Expect = 0.16
Identities = 32/113 (28%), Positives = 35/113 (30%), Gaps = 5/113 (4%)
Frame = +1
Query: 370 PPXGXY*PKSXXGFREPXSLIGFGPXPKPXPLXGXSXXPXPGXGX-GQXKPPPKIW---- 534
PP G + F P S FG P P + P P G G PPP +
Sbjct: 343 PPQGSFGAPPPQQFHAP-SPQSFGGPPPPVSSAPGNFAPPPQSGPPGAFAPPPSAFGAPQ 401
Query: 535 GXXFPXKXXXPPXXGXXXGGXXPXKXXXXXGXFPPXXXPGXXGXXXXPPPXPP 693
G P PP G G G PP PG G PP P
Sbjct: 402 GPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPP--PPGGPGAYGPPPTGFP 452
Score = 31.5 bits (68), Expect = 0.64
Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Frame = +1
Query: 370 PPXGXY*PKSXXGFRE-PXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPKIWGXXF 546
PP P S G + P G+GP P P S P G G PPP G
Sbjct: 386 PPGAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYG 445
Query: 547 PXKXXXPPXXGXXXG 591
P PP G
Sbjct: 446 PPPTGFPPVGAPPPG 460
Score = 29.1 bits (62), Expect = 3.4
Identities = 22/75 (29%), Positives = 22/75 (29%), Gaps = 2/75 (2%)
Frame = +2
Query: 518 PPXKFGXLXSPXXXXX--PPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXP 691
PP FG P PP G G GG P PP G P P
Sbjct: 393 PPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFP 452
Query: 692 PXXXXGGXXXPGXGG 736
P G PG G
Sbjct: 453 PV----GAPPPGAAG 463
Score = 28.3 bits (60), Expect = 6.0
Identities = 15/54 (27%), Positives = 16/54 (29%)
Frame = +2
Query: 533 GXLXSPXXXXXPPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPP 694
G P P GG P G PP+G G PPP P
Sbjct: 388 GAFAPPPSAFGAPQGPGGPGGYGPPPPGGPGAPGSYGPPQGGPGGFGPPPPGGP 441
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPPPXXXXXGG 565
PP PG P GG P P G PP G PP GG
Sbjct: 411 PPPPGGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPPTGFPPVGAPPPGAAGAPGG 467
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.28
Identities = 28/117 (23%), Positives = 33/117 (28%), Gaps = 8/117 (6%)
Frame = +1
Query: 385 Y*PKSXXGFREPXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPKIWGXXFPXKXXX 564
Y P G + + P P P P P P +PPP +P
Sbjct: 243 YQPPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPP 302
Query: 565 PPXXGXXXGG-------XXPXK-XXXXXGXFPPXXXPGXXGXXXXPPPXPPXXXXGG 711
PP G P + G PP PG PPP PP G
Sbjct: 303 PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 359
Score = 32.3 bits (70), Expect = 0.37
Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Frame = +1
Query: 442 PXPKPXPLXGXSXXPXPGXGXGQXKPPPKIWGXXFPXKXXXPPXXGXXXGGXXPXKXXXX 621
P +P PL G + G PPP + P PP G P
Sbjct: 241 PGYQPPPLMGMAQSGYQGQYPPVPPPPPSVT----PMPPPMPPTPGMTPRPPPPPSSGMW 296
Query: 622 XGXFPPXXX--PGXXGXXXXPPPXPP 693
PP PG G PPP PP
Sbjct: 297 PPPPPPPPGRTPGPPGMPGMPPPPPP 322
Score = 31.5 bits (68), Expect = 0.64
Identities = 27/98 (27%), Positives = 29/98 (29%)
Frame = +1
Query: 418 PXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPKIWGXXFPXKXXXPPXXGXXXGGX 597
P G P P P P G + P PG PPP +G PP G G
Sbjct: 289 PPPSSGMWPPPPPPP-PGRTPGP-PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 346
Query: 598 XPXKXXXXXGXFPPXXXPGXXGXXXXPPPXPPXXXXGG 711
P PP G PPP P G
Sbjct: 347 MPPPP-------PPRYPSAGPGMYPPPPPSRPPAPPSG 377
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = +2
Query: 518 PPXKFGXLXSPXXXXXPPXXXXXGG-GXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPP 694
PP G S PP P G +P PP G PPP PP
Sbjct: 245 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 304
Query: 695 XXXXGGXXXPG 727
G PG
Sbjct: 305 GRTPGPPGMPG 315
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +3
Query: 519 PPXNLGXXXPXXXXXXPPXGXKXGGVXAPXKXXXXXXVPPPXXPGXXXGXXXPPPP 686
PP G PP G + G P PPP P G PPPP
Sbjct: 321 PPSRFGPPGMGGMPPPPPPGMRYPGGMPPP--------PPPRYPSAGPGMYPPPPP 368
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.28
Identities = 28/117 (23%), Positives = 33/117 (28%), Gaps = 8/117 (6%)
Frame = +1
Query: 385 Y*PKSXXGFREPXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPKIWGXXFPXKXXX 564
Y P G + + P P P P P P +PPP +P
Sbjct: 253 YQPPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPP 312
Query: 565 PPXXGXXXGG-------XXPXK-XXXXXGXFPPXXXPGXXGXXXXPPPXPPXXXXGG 711
PP G P + G PP PG PPP PP G
Sbjct: 313 PPGRTPGPPGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPPPPPRYPSAG 369
Score = 32.3 bits (70), Expect = 0.37
Identities = 24/86 (27%), Positives = 27/86 (31%), Gaps = 2/86 (2%)
Frame = +1
Query: 442 PXPKPXPLXGXSXXPXPGXGXGQXKPPPKIWGXXFPXKXXXPPXXGXXXGGXXPXKXXXX 621
P +P PL G + G PPP + P PP G P
Sbjct: 251 PGYQPPPLMGMAQSGYQGQYPPVPPPPPSVT----PMPPPMPPTPGMTPRPPPPPSSGMW 306
Query: 622 XGXFPPXXX--PGXXGXXXXPPPXPP 693
PP PG G PPP PP
Sbjct: 307 PPPPPPPPGRTPGPPGMPGMPPPPPP 332
Score = 31.5 bits (68), Expect = 0.64
Identities = 27/98 (27%), Positives = 29/98 (29%)
Frame = +1
Query: 418 PXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPKIWGXXFPXKXXXPPXXGXXXGGX 597
P G P P P P G + P PG PPP +G PP G G
Sbjct: 299 PPPSSGMWPPPPPPP-PGRTPGP-PGMPGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGG 356
Query: 598 XPXKXXXXXGXFPPXXXPGXXGXXXXPPPXPPXXXXGG 711
P PP G PPP P G
Sbjct: 357 MPPPP-------PPRYPSAGPGMYPPPPPSRPPAPPSG 387
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/71 (28%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Frame = +2
Query: 518 PPXKFGXLXSPXXXXXPPXXXXXGG-GXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPP 694
PP G S PP P G +P PP G PPP PP
Sbjct: 255 PPPLMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPP 314
Query: 695 XXXXGGXXXPG 727
G PG
Sbjct: 315 GRTPGPPGMPG 325
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/56 (30%), Positives = 18/56 (32%)
Frame = +3
Query: 519 PPXNLGXXXPXXXXXXPPXGXKXGGVXAPXKXXXXXXVPPPXXPGXXXGXXXPPPP 686
PP G PP G + G P PPP P G PPPP
Sbjct: 331 PPSRFGPPGMGGMPPPPPPGMRYPGGMPPP--------PPPRYPSAGPGMYPPPPP 378
>Z79596-1|CAB01857.1| 830|Caenorhabditis elegans Hypothetical
protein C02C6.1a protein.
Length = 830
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGG----GXXXXPXXPRGGXGGEPPXXPXXFXGXXPPP 586
P PG P GG G G P P GG G PP P PPP
Sbjct: 771 PAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>L29031-1|AAB72228.2| 830|Caenorhabditis elegans dynamin protein.
Length = 830
Score = 32.3 bits (70), Expect = 0.37
Identities = 19/54 (35%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGG----GXXXXPXXPRGGXGGEPPXXPXXFXGXXPPP 586
P PG P GG G G P P GG G PP P PPP
Sbjct: 771 PAPPGGRQAPMPPRGGPGAPPPPGMRPPPGAPGGGGGMYPPLIPTRPGPGGPPP 824
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.37
Identities = 30/109 (27%), Positives = 34/109 (31%), Gaps = 4/109 (3%)
Frame = +2
Query: 410 SGNPXP*LVLXPXQNPXPFXGXXXXXXPGXXXGXKNPPXKFGXLXSPXXXXXPPXXXXXG 589
+G+P P P + P G P PP + G P PP
Sbjct: 234 AGSPPP---PPPPKGSPPLAGSGSPPPP--PAAGSPPPPRTGSPPPPPTGSPPPPP---A 285
Query: 590 GGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPP----XPPXXXXGGXXXP 724
GG P G PP PPRG PPP PP G P
Sbjct: 286 GGSPPPPRAGSP--PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 332
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 32.3 bits (70), Expect = 0.37
Identities = 30/109 (27%), Positives = 34/109 (31%), Gaps = 4/109 (3%)
Frame = +2
Query: 410 SGNPXP*LVLXPXQNPXPFXGXXXXXXPGXXXGXKNPPXKFGXLXSPXXXXXPPXXXXXG 589
+G+P P P + P G P PP + G P PP
Sbjct: 255 AGSPPP---PPPPKGSPPLAGSGSPPPP--PAAGSPPPPRTGSPPPPPTGSPPPPP---A 306
Query: 590 GGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPP----XPPXXXXGGXXXP 724
GG P G PP PPRG PPP PP G P
Sbjct: 307 GGSPPPPRAGSP--PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 353
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 32.3 bits (70), Expect = 0.37
Identities = 30/109 (27%), Positives = 34/109 (31%), Gaps = 4/109 (3%)
Frame = +2
Query: 410 SGNPXP*LVLXPXQNPXPFXGXXXXXXPGXXXGXKNPPXKFGXLXSPXXXXXPPXXXXXG 589
+G+P P P + P G P PP + G P PP
Sbjct: 240 AGSPPP---PPPPKGSPPLAGSGSPPPP--PAAGSPPPPRTGSPPPPPTGSPPPPP---A 291
Query: 590 GGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPP----XPPXXXXGGXXXP 724
GG P G PP PPRG PPP PP G P
Sbjct: 292 GGSPPPPRAGSP--PPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPP 338
>Z70312-3|CAA94385.1| 172|Caenorhabditis elegans Hypothetical
protein ZC168.5 protein.
Length = 172
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/31 (41%), Positives = 13/31 (41%)
Frame = +2
Query: 635 PPXPPRGXXGXXXXPPPXPPXXXXGGXXXPG 727
PP PP G PPP PP GG G
Sbjct: 40 PPPPPPPCGGGYEAPPPPPPPSYAGGPSYAG 70
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/41 (34%), Positives = 15/41 (36%)
Frame = +2
Query: 587 GGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPPXXXXG 709
G G P + PP PP G PPP PP G
Sbjct: 25 GLGLGPQRPQQCCCPPPPPPPPCGGGYEAPPPPPPPSYAGG 65
>AF535160-1|AAN33048.1| 468|Caenorhabditis elegans UNC-34 protein.
Length = 468
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +2
Query: 566 PPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPP 694
PP GG P G PP PP G PPP PP
Sbjct: 215 PPAPPPPIGGIAPVNAHGAPP-PPPLPPVGAGAPPPPPPPPPP 256
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = +3
Query: 519 PPXNLGXXXPXXXXXXPPXGXKXGGVXAPXKXXXXXXVPPPXXPGXXXGXXXPPPPXP 692
PP L P PP GG+ AP PPP P G PPPP P
Sbjct: 203 PPVPLTSNIPQAPPAPPPP---IGGI-APVNAHGAP--PPPPLPPVGAGAPPPPPPPP 254
>AC025722-6|AAO12398.1| 310|Caenorhabditis elegans Uncoordinated
protein 34, isoform b protein.
Length = 310
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +2
Query: 566 PPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPP 694
PP GG P G PP PP G PPP PP
Sbjct: 201 PPAPPPPIGGIAPVNAHGAPP-PPPLPPVGAGAPPPPPPPPPP 242
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = +3
Query: 519 PPXNLGXXXPXXXXXXPPXGXKXGGVXAPXKXXXXXXVPPPXXPGXXXGXXXPPPPXP 692
PP L P PP GG+ AP PPP P G PPPP P
Sbjct: 189 PPVPLTSNIPQAPPAPPPP---IGGI-APVNAHGAP--PPPPLPPVGAGAPPPPPPPP 240
>AC025722-5|AAO12397.1| 454|Caenorhabditis elegans Uncoordinated
protein 34, isoform a protein.
Length = 454
Score = 31.1 bits (67), Expect = 0.85
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +2
Query: 566 PPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPP 694
PP GG P G PP PP G PPP PP
Sbjct: 201 PPAPPPPIGGIAPVNAHGAPP-PPPLPPVGAGAPPPPPPPPPP 242
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/58 (34%), Positives = 21/58 (36%)
Frame = +3
Query: 519 PPXNLGXXXPXXXXXXPPXGXKXGGVXAPXKXXXXXXVPPPXXPGXXXGXXXPPPPXP 692
PP L P PP GG+ AP PPP P G PPPP P
Sbjct: 189 PPVPLTSNIPQAPPAPPPP---IGGI-APVNAHGAP--PPPPLPPVGAGAPPPPPPPP 240
>AF026211-4|AAB71295.1| 416|Caenorhabditis elegans Collagen protein
40 protein.
Length = 416
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/57 (29%), Positives = 17/57 (29%)
Frame = +2
Query: 566 PPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPPXXXXGGXXXPGXGG 736
PP GG P G G P G G P P P G PG G
Sbjct: 176 PPGPAGPAGGPGPAGPPGPAGADGNTPSGGGEGPAGPPGPPGPAGNPGTDGAPGNPG 232
>Z81479-3|CAB03942.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.3 protein.
Length = 283
Score = 29.5 bits (63), Expect = 2.6
Identities = 30/112 (26%), Positives = 35/112 (31%), Gaps = 6/112 (5%)
Frame = +1
Query: 418 PXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPK-IWGXXFP-XKXXXPPXXGXXXG 591
P ++ G GP P P G PG G + P P+ G P + P G
Sbjct: 144 PGAVGGPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQTRS 203
Query: 592 GXXPXKXXXXXGXFPPXXXPGXXGXXXXP----PPXPPXXXXGGXXXPXXXG 735
P G PG G P PP PP GG P G
Sbjct: 204 APSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGPP-GDNGGQGEPGKDG 254
>Z81479-2|CAB03941.1| 283|Caenorhabditis elegans Hypothetical
protein C34F6.2 protein.
Length = 283
Score = 29.5 bits (63), Expect = 2.6
Identities = 30/112 (26%), Positives = 35/112 (31%), Gaps = 6/112 (5%)
Frame = +1
Query: 418 PXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPK-IWGXXFP-XKXXXPPXXGXXXG 591
P ++ G GP P P G PG G + P P+ G P + P G
Sbjct: 144 PGAVGGPGPKGPPGPPGGPGELGGPGRGGNRGPPGPRGPPGEAGPDGEGGRPGQAGQTRS 203
Query: 592 GXXPXKXXXXXGXFPPXXXPGXXGXXXXP----PPXPPXXXXGGXXXPXXXG 735
P G PG G P PP PP GG P G
Sbjct: 204 APSPPGQPGQPGEPGSPGEPGPDGRAGHPGRNGPPGPP-GDNGGQGEPGKDG 254
>Z81053-1|CAB02877.1| 385|Caenorhabditis elegans Hypothetical
protein E02A10.2 protein.
Length = 385
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = +2
Query: 587 GGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPPXXXXGGXXXPGXGG 736
GGG G GG G G PPP PP GG G GG
Sbjct: 24 GGGGGGGGCGGGCGGGGGCGGGGGCGGGCAPPPPPP--ACGGGCGGGGGG 71
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/50 (36%), Positives = 18/50 (36%)
Frame = +2
Query: 587 GGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPPXXXXGGXXXPGXGG 736
GGG G GG G G PPP PP GG G GG
Sbjct: 81 GGGGCGGGGGGCGGGGGGCGGGGGCGGGCAPPPPPP--ACGGGCGGGGGG 128
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 626 GGSPPXPPRGXXGXXXXPPPXPPXXXXGG 712
G PP PP+G PPP P GG
Sbjct: 677 GQGPPPPPQGQQYYGGPPPPGQPYGPPGG 705
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +2
Query: 566 PPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPPXXXXGGXXXP 724
P GG P + G GG PP R P P PP G P
Sbjct: 684 PQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPP 736
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 13/29 (44%)
Frame = +2
Query: 626 GGSPPXPPRGXXGXXXXPPPXPPXXXXGG 712
G PP PP+G PPP P GG
Sbjct: 677 GQGPPPPPQGQQYYGGPPPPGQPYGPPGG 705
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/53 (30%), Positives = 17/53 (32%)
Frame = +2
Query: 566 PPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPPXXXXGGXXXP 724
P GG P + G GG PP R P P PP G P
Sbjct: 684 PQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPP 736
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 27.1 bits (57), Expect(2) = 3.4
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 242 GCSCCRNHRXPR*CVRHLITXLRSTCCT 325
GC CCR C R T R+ CCT
Sbjct: 85 GCCCCRPRCCC--CCRRCCTCCRTCCCT 110
Score = 20.6 bits (41), Expect(2) = 3.4
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = +2
Query: 176 STNDVLMVPCDQLASYLGKTCSGCSCC 256
ST D L S K GC CC
Sbjct: 42 STTSSSETSIDTLGSSRVKRQGGCGCC 68
>U80451-9|AAB37843.1| 285|Caenorhabditis elegans Collagen protein
73 protein.
Length = 285
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/57 (28%), Positives = 16/57 (28%)
Frame = +2
Query: 566 PPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXPPPXPPXXXXGGXXXPGXGG 736
PP G P G G P G G P P P G PG G
Sbjct: 142 PPGPAGNAGNPGPKGPPGQPGAPGEQGPNGRPGAPGAPGPQGPPGTAGNDGTPGQPG 198
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = +2
Query: 617 GXXGGSP---PXPPRGXXGXXXXPPPXPP 694
G GGS P PP G G PPP PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPP 680
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/29 (48%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Frame = +2
Query: 617 GXXGGSP---PXPPRGXXGXXXXPPPXPP 694
G GGS P PP G G PPP PP
Sbjct: 652 GSGGGSSMPMPVPPPGGLGGFMPPPPPPP 680
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 27.1 bits (57), Expect(2) = 3.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 242 GCSCCRNHRXPR*CVRHLITXLRSTCCT 325
GC CCR C R T R+ CCT
Sbjct: 84 GCCCCRPRCCC--CCRRCCTCCRTCCCT 109
Score = 20.6 bits (41), Expect(2) = 3.5
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = +2
Query: 176 STNDVLMVPCDQLASYLGKTCSGCSCC 256
ST D L S K GC CC
Sbjct: 41 STTSSSETSIDTLGSSRVKRQGGCGCC 67
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 26.6 bits (56), Expect(2) = 4.5
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 242 GCSCCRNHRXPR*CVRHLITXLRSTCCT 325
GC CCR C R T R+ CCT
Sbjct: 84 GCCCCRPKCCC--CCRRCCTCCRTCCCT 109
Score = 20.6 bits (41), Expect(2) = 4.5
Identities = 10/27 (37%), Positives = 10/27 (37%)
Frame = +2
Query: 176 STNDVLMVPCDQLASYLGKTCSGCSCC 256
ST D L S K GC CC
Sbjct: 40 STTSSSETSIDTLGSSRVKRQGGCGCC 66
>Z79596-2|CAC42251.1| 838|Caenorhabditis elegans Hypothetical
protein C02C6.1b protein.
Length = 838
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -3
Query: 732 PXPGXXXPPXXXXGGXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPPPXXXXXGG 565
P P P GG P PRGG G PP G PPP GG
Sbjct: 758 PHPSGPSPVPRPAPAPPGGRQA-PMPPRGGPGAPPP------PGMRPPPGAPGGGG 806
>Z73102-2|CAB63428.1| 341|Caenorhabditis elegans Hypothetical
protein B0035.1b protein.
Length = 341
Score = 28.7 bits (61), Expect = 4.5
Identities = 31/113 (27%), Positives = 35/113 (30%)
Frame = +1
Query: 355 YGGTFPPXGXY*PKSXXGFREPXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPKIW 534
YG P G Y + E S + GP P P P+ P PG PPP
Sbjct: 80 YGMQGIPSGAYRGAADEEPDEKRSRMDNGP-PMPTPMPFPQHFPFPGMPPMPSGPPPPSM 138
Query: 535 GXXFPXKXXXPPXXGXXXGGXXPXKXXXXXGXFPPXXXPGXXGXXXXPPPXPP 693
P P G P G +PP PG PPP P
Sbjct: 139 AYGMP-----PMPSGMMPPRGMPGAYPPPRG-YPPAPAPG----VYMPPPGMP 181
>Z73102-1|CAA97419.1| 298|Caenorhabditis elegans Hypothetical
protein B0035.1a protein.
Length = 298
Score = 28.7 bits (61), Expect = 4.5
Identities = 31/113 (27%), Positives = 35/113 (30%)
Frame = +1
Query: 355 YGGTFPPXGXY*PKSXXGFREPXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPKIW 534
YG P G Y + E S + GP P P P+ P PG PPP
Sbjct: 80 YGMQGIPSGAYRGAADEEPDEKRSRMDNGP-PMPTPMPFPQHFPFPGMPPMPSGPPPPSM 138
Query: 535 GXXFPXKXXXPPXXGXXXGGXXPXKXXXXXGXFPPXXXPGXXGXXXXPPPXPP 693
P P G P G +PP PG PPP P
Sbjct: 139 AYGMP-----PMPSGMMPPRGMPGAYPPPRG-YPPAPAPG----VYMPPPGMP 181
>Z29443-8|CAE45742.1| 455|Caenorhabditis elegans Hypothetical
protein T07C4.9b protein.
Length = 455
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +1
Query: 433 GFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPKIWGXXFPXKXXXPPXXGXXXGG 594
G G P P G P G GQ P G P + PP G GG
Sbjct: 65 GQGGAPYPGGSGGYPQAPQYGFSGGQGSAPQPNQGGYPPQQQQYPPQQGYQQGG 118
>Z29443-7|CAA82571.2| 497|Caenorhabditis elegans Hypothetical
protein T07C4.9a protein.
Length = 497
Score = 28.7 bits (61), Expect = 4.5
Identities = 17/54 (31%), Positives = 18/54 (33%)
Frame = +1
Query: 433 GFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPKIWGXXFPXKXXXPPXXGXXXGG 594
G G P P G P G GQ P G P + PP G GG
Sbjct: 107 GQGGAPYPGGSGGYPQAPQYGFSGGQGSAPQPNQGGYPPQQQQYPPQQGYQQGG 160
>AF167982-1|AAD50438.1| 838|Caenorhabditis elegans dynamin protein.
Length = 838
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/56 (33%), Positives = 19/56 (33%)
Frame = -3
Query: 732 PXPGXXXPPXXXXGGXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPPPXXXXXGG 565
P P P GG P PRGG G PP G PPP GG
Sbjct: 758 PHPSGPSPVPRPAPAPPGGRQA-PMPPRGGPGAPPP------PGMRPPPGAPGGGG 806
>Z68338-7|CAA92756.2| 866|Caenorhabditis elegans Hypothetical
protein T24B8.4 protein.
Length = 866
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/51 (31%), Positives = 18/51 (35%)
Frame = +1
Query: 373 PXGXY*PKSXXGFREPXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPP 525
P G P G P + G P P P+ G P P G PPP
Sbjct: 70 PNGFIPPPPGPGGIPPPPPMFAGGIPPPPPMMGGIPPPPPMFGAPPPPPPP 120
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/57 (31%), Positives = 22/57 (38%)
Frame = +1
Query: 358 GGTFPPXGXY*PKSXXGFREPXSLIGFGPXPKPXPLXGXSXXPXPGXGXGQXKPPPK 528
GG PP P G P ++G P P P+ G P P G G PP+
Sbjct: 81 GGIPPPP----PMFAGGIPPPPPMMG--GIPPPPPMFGAPPPPPPPSGLGVAPQPPR 131
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/57 (28%), Positives = 18/57 (31%)
Frame = +3
Query: 522 PXNLGXXXPXXXXXXPPXGXKXGGVXAPXKXXXXXXVPPPXXPGXXXGXXXPPPPXP 692
P +L P P G + V AP PPP P PPP P
Sbjct: 86 PHHLQHPHPYAYPGYPVPGQEGHQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPP 142
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Frame = +2
Query: 590 GGXXPXKXXGXXGGSPPXPP---RGXXGXXXXPPPXPP 694
G P G SPP PP + G PPP PP
Sbjct: 107 GHQVPAPQHGDHEASPPPPPPPRKSRAGGSSPPPPPPP 144
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 28.3 bits (60), Expect = 6.0
Identities = 21/82 (25%), Positives = 23/82 (28%)
Frame = +2
Query: 491 PGXXXGXKNPPXKFGXLXSPXXXXXPPXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXX 670
P G PP + G L P P G P G G +G G
Sbjct: 478 PRGPPGLPGPPGEKGDL-GPPGLPGQPGSLGLPGPPGPMGLRGPHGTEGETGKQGPEGSK 536
Query: 671 XXPPPXPPXXXXGGXXXPGXGG 736
P P P G PG G
Sbjct: 537 GYPGPMGPQGPPGNDGEPGIDG 558
>AF025467-2|AAN65301.1| 505|Caenorhabditis elegans Hypothetical
protein R148.5b protein.
Length = 505
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGXGGE----PPXXPXXFXGXXPPP 586
PP G PP G G P P G G PP P F G PP
Sbjct: 298 PPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPP 351
>AF025467-1|AAB71039.2| 528|Caenorhabditis elegans Hypothetical
protein R148.5a protein.
Length = 528
Score = 28.3 bits (60), Expect = 6.0
Identities = 18/54 (33%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGXGGE----PPXXPXXFXGXXPPP 586
PP G PP G G P P G G PP P F G PP
Sbjct: 298 PPPRGHFPPPPPHFMGRGMPPPFMPPPPHFGMGPPRGFMPPPHPMMFRGGPYPP 351
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/36 (36%), Positives = 13/36 (36%)
Frame = -3
Query: 693 GGXGGGXXXXPXXPRGGXGGEPPXXPXXFXGXXPPP 586
GG GGG GG P P G PPP
Sbjct: 126 GGGGGGGGGYASGGSGGFASAPVSLPAPSYGGPPPP 161
>Z74472-4|CAA98942.1| 301|Caenorhabditis elegans Hypothetical
protein F23H12.4 protein.
Length = 301
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Frame = +2
Query: 506 GXKNPPXKFGXLXSPXXXXXP--PXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXP 679
G + PP G +P P P P + PP PP G G P
Sbjct: 186 GPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPP-GAPGNDGPP 244
Query: 680 PPXPPXXXXGGXXXPGXGG 736
P P G PG G
Sbjct: 245 GPPGPKGAPGPDGPPGVDG 263
>V00147-1|CAA23463.1| 296|Caenorhabditis elegans protein (
Caenorhabditis elegansgene Col-1 coding for a collagen.
).
Length = 296
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Frame = +2
Query: 506 GXKNPPXKFGXLXSPXXXXXP--PXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXP 679
G + PP G +P P P P + PP PP G G P
Sbjct: 181 GPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPP-GAPGNDGPP 239
Query: 680 PPXPPXXXXGGXXXPGXGG 736
P P G PG G
Sbjct: 240 GPPGPKGAPGPDGPPGADG 258
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -3
Query: 735 PPXPGXXXPPXXXXGGXGGGXXXXPXXPRGGXGGEPP 625
PP PG P G P GG GG PP
Sbjct: 490 PPHPGHPGYPPQHMNAFSPGQYPGHQRPPGGPGGPPP 526
>J01047-1|AAA27988.1| 296|Caenorhabditis elegans protein (
C.elegans (nematode)collagen 1 (col-1) gene, complete
cds. ).
Length = 296
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/79 (26%), Positives = 24/79 (30%), Gaps = 2/79 (2%)
Frame = +2
Query: 506 GXKNPPXKFGXLXSPXXXXXP--PXXXXXGGGXXPXKXXGXXGGSPPXPPRGXXGXXXXP 679
G + PP G +P P P P + PP PP G G P
Sbjct: 181 GPRGPPGPAGEAGAPGPAGEPGTPAISEPLTPGAPGEPGDSGPPGPPGPP-GAPGNDGPP 239
Query: 680 PPXPPXXXXGGXXXPGXGG 736
P P G PG G
Sbjct: 240 GPPGPKGAPGPDGPPGADG 258
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 626 GGSPPXPPRGXXGXXXXPPPXPP 694
GG PP P G G PP PP
Sbjct: 624 GGGPPRGPGGGGGGGPTGPPAPP 646
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +2
Query: 626 GGSPPXPPRGXXGXXXXPPPXPP 694
GG PP P G G PP PP
Sbjct: 624 GGGPPRGPGGGGGGGPTGPPAPP 646
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/49 (30%), Positives = 16/49 (32%)
Frame = +3
Query: 546 PXXXXXXPPXGXKXGGVXAPXKXXXXXXVPPPXXPGXXXGXXXPPPPXP 692
P PP G + A PPP P G PPPP P
Sbjct: 535 PPPVSSIPPPPPIAGLLAANGTNVPIPPPPPPPLPQNLSGAPPPPPPPP 583
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/30 (40%), Positives = 12/30 (40%)
Frame = +2
Query: 635 PPXPPRGXXGXXXXPPPXPPXXXXGGXXXP 724
PP PP PPP PP GG P
Sbjct: 563 PPPPPLPQNLSGAPPPPPPPPPMLGGPPPP 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,730,624
Number of Sequences: 27780
Number of extensions: 371999
Number of successful extensions: 1960
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1413
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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