Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_B08
(801 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 31 1.1
07_03_1747 + 29188568-29188715,29188793-29189541 30 2.5
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 5.7
06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438... 29 5.7
04_01_0065 - 636957-637082,637165-637251,637365-637625,637695-63... 29 5.7
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 7.5
03_02_0111 + 5688649-5688942 28 7.5
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 7.5
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 7.5
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668... 28 9.9
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 31.1 bits (67), Expect = 1.1
Identities = 23/58 (39%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = -3
Query: 325 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVRGGS 155
H P AAA P VP++ P L + S GG GL S S + G + D G+ GGS
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGI-GGS 62
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/51 (35%), Positives = 25/51 (49%)
Frame = +3
Query: 378 PPPGTTLSAPVYLITAPSPX*SAWTLALQFLCXXTIGPTTCXLARSSXVLG 530
PPP TT++ V L TA + S + QF+C TTC + S + G
Sbjct: 213 PPPTTTMAQHVVLPTAAA---SCHQMQDQFVCARAAETTTCCWSESESLPG 260
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 5.7
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +1
Query: 223 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 339
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>06_01_0606 -
4382133-4382704,4383017-4383336,4384152-4384258,
4384339-4384512,4384956-4385204,4386831-4386986
Length = 525
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 88 AECENATSLSLMIDSLLATYDRDSPPVLQNRSQPD 192
A + SL +DSL +D+PPV Q + +P+
Sbjct: 424 ASTSDERSLMARVDSLCCLIQKDTPPVAQPKPEPN 458
>04_01_0065 -
636957-637082,637165-637251,637365-637625,637695-638100,
640036-640223
Length = 355
Score = 28.7 bits (61), Expect = 5.7
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -3
Query: 277 FVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVRGGSPDRTLRGASRS*GTVMLRF 98
++ +H C+ G G+ N+S+ + D + G SPD L G + ++ R
Sbjct: 6 YLQSLHFN-CIRLPDGAGVVNMSLPIVLAIGDREKEEIGSSPDVALHGPDGAVLAILRRV 64
Query: 97 RILPH 83
I PH
Sbjct: 65 EIYPH 69
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +1
Query: 229 VHRANTGRSSNELDRQTTELERRGVG 306
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>03_02_0111 + 5688649-5688942
Length = 97
Score = 28.3 bits (60), Expect = 7.5
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +3
Query: 300 SGAAALGWCPRNACGGLTWYC*TRLQPPPGTTLSAPVYLITAPSPX*SAWT 452
+ AAA P G + + PPP L+ P+Y + AP SA+T
Sbjct: 33 TAAAAAATGPHRRGRGRCYCSASDAPPPPPYVLTTPLYYVNAPPHMGSAYT 83
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 407 GRGERSPRRWLQPRLAVPRQASTSVPRTP 321
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -2
Query: 404 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 282
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
>04_03_0961 +
21263735-21263773,21264157-21264279,21266774-21266847,
21266939-21267095,21267554-21267694,21267739-21267823,
21268810-21268903,21269041-21269239,21269515-21269549,
21270076-21270631,21270722-21270882,21271704-21271718,
21273078-21273330,21273439-21273562,21273688-21273788,
21274870-21274938,21275060-21275191,21275270-21275404,
21275489-21275551,21275636-21275881,21276007-21276285
Length = 1026
Score = 27.9 bits (59), Expect = 9.9
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +2
Query: 158 PPPYSKIVVNLTLHLRHANIRESESTVRIQADLQMNWID 274
PPPY I N LH RH +E + V + Q N +D
Sbjct: 64 PPPYIHIETNDFLHRRHKRQKEEDIAV---CECQYNLLD 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,930,765
Number of Sequences: 37544
Number of extensions: 439171
Number of successful extensions: 1510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1412
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1506
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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