Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_B07
(817 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 38 0.006
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 38 0.011
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 38 0.011
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.011
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 38 0.011
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 38 0.011
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 38 0.011
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 36 0.026
Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical pr... 36 0.046
Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical pr... 33 0.18
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.18
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 33 0.18
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 33 0.18
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 33 0.18
AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated... 33 0.24
AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical ... 33 0.24
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 32 0.43
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 32 0.43
AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical ... 31 0.75
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 31 0.75
Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical pr... 31 1.3
Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical pr... 31 1.3
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 1.7
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 1.7
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 1.7
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 30 1.7
AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical ... 30 2.3
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 29 5.3
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 29 5.3
U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical p... 29 5.3
AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical ... 29 5.3
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 28 7.0
AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical... 28 7.0
AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like pro... 28 7.0
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 28 7.0
Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical pr... 28 9.2
AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical ... 28 9.2
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 38.3 bits (85), Expect = 0.006
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +3
Query: 90 TCAIASAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRI 266
T +A +E +S S + LL +++ SPPD ++ ++ + L H I E +++
Sbjct: 56 TVGVAEFSEQYQGSS-SRLTRHLLEKHNKCSPPDGRVDISHNIELVHIIGINELNQNMQV 114
Query: 267 LADLQMNWIDKRLSWNAGGM-GLQH 338
L + W D LSW G++H
Sbjct: 115 LVYIVQQWTDASLSWKVEEFRGIKH 139
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 144 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 320
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 321 GMG 329
G
Sbjct: 130 LFG 132
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 144 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 320
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 321 GMG 329
G
Sbjct: 130 LFG 132
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 144 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 320
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 321 GMG 329
G
Sbjct: 130 LFG 132
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 144 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 320
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 321 GMG 329
G
Sbjct: 130 LFG 132
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 144 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 320
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 321 GMG 329
G
Sbjct: 130 LFG 132
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 144 MIDSLLATYDRESPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLSWNAG 320
+ + LL+ ++ +PPD + V L L H I E + T+ +L + +W+D L+W+
Sbjct: 70 LTEYLLSRHNLNAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPA 129
Query: 321 GMG 329
G
Sbjct: 130 LFG 132
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 36.3 bits (80), Expect = 0.026
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 168 YDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 317
YD E+P + L +L+ ++E + + ++ ++ W D RLSWNA
Sbjct: 64 YDNEAPKRYNYTIFL-YYLKLVEVQEPQEKISVVMEIMEYWYDARLSWNA 112
>Z67737-1|CAA91536.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.1 protein.
Length = 399
Score = 35.5 bits (78), Expect = 0.046
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Frame = +3
Query: 147 IDSLLATYDRESP----PDSKIVVNLTL---HLRHANIRESESTVRILADLQMNWIDKRL 305
+ + A +D P PD+ N TL +L+ + E E V ++ +L W D RL
Sbjct: 50 VSPVYAWFDTSKPLGYDPDAPQRYNYTLFLYNLKLIQVNEPEEQVSVVLELMEYWYDPRL 109
Query: 306 SWNA 317
SWNA
Sbjct: 110 SWNA 113
>Z67737-5|CAA91541.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.6 protein.
Length = 401
Score = 33.5 bits (73), Expect = 0.18
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +3
Query: 210 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 317
L +L+ ++E E V ++ +L W D RLSWN+
Sbjct: 79 LLYYLKLVEVQEPEEKVSVVLELVEQWYDPRLSWNS 114
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +3
Query: 144 MIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 308
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 309 W---NAGGMGLQHL 341
W N GG+ + ++
Sbjct: 90 WDPVNYGGVNVLYV 103
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +3
Query: 144 MIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 308
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 309 W---NAGGMGLQHL 341
W N GG+ + ++
Sbjct: 90 WDPVNYGGVNVLYV 103
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 33.5 bits (73), Expect = 0.18
Identities = 19/74 (25%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Frame = +3
Query: 144 MIDSLLATYDRE----SPPDSKIVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 308
+ D L+ Y+R + P+ + + L L L ++ E + + L+ WID++LS
Sbjct: 30 LYDDLMVNYNRHRRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLS 89
Query: 309 W---NAGGMGLQHL 341
W N GG+ + ++
Sbjct: 90 WDPVNYGGVNVLYV 103
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 33.5 bits (73), Expect = 0.18
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)
Frame = +3
Query: 144 MIDSLLATYDRESPP--DSK--IVVNLTLHLRHA-NIRESESTVRILADLQMNWIDKRLS 308
+I+ L++ Y RE P DS +VV+L + L+ N+ E E + + A L+ W D+ L
Sbjct: 25 LINDLMSGYVREERPTLDSSKPVVVSLGVFLQQIINLSEKEEQLEVNAWLKFQWRDENLR 84
Query: 309 W 311
W
Sbjct: 85 W 85
>AC084197-41|AAG23462.3| 493|Caenorhabditis elegans Ligand-gated
ion channel protein 10 protein.
Length = 493
Score = 33.1 bits (72), Expect = 0.24
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Frame = +3
Query: 108 AAECENATSL----SLMIDSLLATYDRESPP--DSKIVVNLTLHLRHA-NIRESESTVRI 266
A CEN +L S +++ + YDR P ++VN+T+ L ++E++
Sbjct: 57 ALNCENFRTLDNETSAILNDIFVGYDRRVLPFVQGPVLVNMTIVLGILIELKENQQLAAY 116
Query: 267 LADLQMNWIDKRLSWN 314
+ W D RLSW+
Sbjct: 117 VISHTQRWYDGRLSWD 132
>AC024783-1|AAY86294.1| 404|Caenorhabditis elegans Hypothetical
protein Y45G5AL.2 protein.
Length = 404
Score = 33.1 bits (72), Expect = 0.24
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +3
Query: 183 PPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNAGGM-GLQHL 341
PP +I + L++ ++ + E E L D + +W D RLSW+ G+ H+
Sbjct: 79 PPRFEITIQLSM-MKLVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYGGINHI 131
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 201 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 314
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 32.3 bits (70), Expect = 0.43
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +3
Query: 201 VVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 314
+V++ H+ H +I + E T+ + + M W D+ L W+
Sbjct: 74 IVDVHWHIIHVSINQREQTMTVHGHIYMRWFDEFLVWD 111
>AF038614-9|AAB92062.2| 445|Caenorhabditis elegans Hypothetical
protein F15E6.2 protein.
Length = 445
Score = 31.5 bits (68), Expect = 0.75
Identities = 16/79 (20%), Positives = 32/79 (40%)
Frame = +3
Query: 105 SAAECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQM 284
S C+ + + TY + +K+V ++ + + I E V++ +
Sbjct: 54 SCHSCQGGDRAWKLRTHIQTTYQNATDNKTKVVRVESVRINNVEIDERRQNVKVFGRFVL 113
Query: 285 NWIDKRLSWNAGGMGLQHL 341
+W D +SW+ GL L
Sbjct: 114 SWNDTMVSWDKEQWGLSWL 132
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 31.5 bits (68), Expect = 0.75
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +3
Query: 183 PPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 314
PP +++ + + + L+ ++ E E V L D W D+RL WN
Sbjct: 51 PPITELKLTMAM-LKLVDVVEVEEKVTFLFDYLAEWTDQRLKWN 93
>Z67737-4|CAA91539.2| 401|Caenorhabditis elegans Hypothetical
protein T01H10.5 protein.
Length = 401
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +3
Query: 210 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 314
L +L+ ++E V ++ +L W D RLSWN
Sbjct: 79 LLYYLKLVEVQEPAEKVSVVLELVERWYDPRLSWN 113
>Z67737-2|CAA91537.3| 400|Caenorhabditis elegans Hypothetical
protein T01H10.2 protein.
Length = 400
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = +3
Query: 168 YDRESPPDSKIVVNLTLHLRHANIRESESTVRILADLQMNWIDKRLSWNA 317
YD ++P + L L+ + E V ++ ++ W D RLSWNA
Sbjct: 64 YDPDAPKRYNYSIML-YSLKLVEVNEPAEKVAVVMEIMEYWYDIRLSWNA 112
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/65 (29%), Positives = 20/65 (30%)
Frame = +2
Query: 623 PPXPXGMXXXXXAPPXAXXXXPVGGGRPRAXSXXXSPXRGXXPPXXSXXXXPPRVPXXPX 802
PP P G+ PP P GG P P G PP PP P
Sbjct: 713 PPPPPGLPPITGGPPPPP---PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
Query: 803 PXRXP 817
P P
Sbjct: 770 PPPPP 774
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/65 (29%), Positives = 20/65 (30%)
Frame = +2
Query: 623 PPXPXGMXXXXXAPPXAXXXXPVGGGRPRAXSXXXSPXRGXXPPXXSXXXXPPRVPXXPX 802
PP P G+ PP P GG P P G PP PP P
Sbjct: 713 PPPPPGLPPITGGPPPPP---PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 769
Query: 803 PXRXP 817
P P
Sbjct: 770 PPPPP 774
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.3 bits (65), Expect = 1.7
Identities = 19/65 (29%), Positives = 20/65 (30%)
Frame = +2
Query: 623 PPXPXGMXXXXXAPPXAXXXXPVGGGRPRAXSXXXSPXRGXXPPXXSXXXXPPRVPXXPX 802
PP P G+ PP P GG P P G PP PP P
Sbjct: 296 PPPPPGLPPITGGPPPPP---PPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCP 352
Query: 803 PXRXP 817
P P
Sbjct: 353 PPPPP 357
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +3
Query: 234 NIRESESTVRILADLQMNWIDKRLSWNA---GGMGLQHLAG 347
++ E + + + L +W+D RLSWN G + L H G
Sbjct: 44 DVHEKDQVITLKGTLIHHWLDYRLSWNPDEFGNITLMHFPG 84
>AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical
protein M01G5.1 protein.
Length = 889
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/41 (36%), Positives = 16/41 (39%)
Frame = -2
Query: 816 GXRXGXGXXGTRGGXXXXEXXGGXXPRXGEXXXXXARGRPP 694
G R G G G RGG E GG R G + PP
Sbjct: 844 GRRGGRGRSGGRGGGRGRERDGGSRGRGGRGGRGNSGNEPP 884
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = +3
Query: 120 ENATSLS-LMIDSLLATYDRESPPDSKIVVNLT-LHLRHANIRESESTVRILADLQMNWI 293
E+A L+ L I +A+ + +N L+H + E + I L+++W
Sbjct: 33 ESAKKLAKLNIPHAIASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWH 92
Query: 294 DKRLSWN 314
D RL WN
Sbjct: 93 DDRLMWN 99
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/70 (25%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = +3
Query: 135 LSLMIDSLLATYDRESPP----DSKIVVNLTLHL-RHANIRESESTVRILADLQMNWIDK 299
+S ++++LL Y++ P + V +L R ++ E + L+M W DK
Sbjct: 29 VSQLLENLLTDYNKAVRPVHNASDALKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDK 88
Query: 300 RLSWNAGGMG 329
+L+WN G
Sbjct: 89 KLTWNPTDWG 98
>U10401-10|AAA19062.2| 476|Caenorhabditis elegans Hypothetical
protein T20B12.9 protein.
Length = 476
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +3
Query: 114 ECENATSLSLMIDSLLATYDRESPPDSKIVVNLTLHLRHANIRE-SESTVRILADLQMN- 287
E + +L +ID+LL YD P+++ VN+T+ L + SE T D+ +
Sbjct: 9 EFNSRINLGKLIDTLLTDYDTHLLPEAE-GVNVTIELHVQGVSGISEITGDFSLDVMYSE 67
Query: 288 -WIDKRLSW 311
W D RLS+
Sbjct: 68 IWQDPRLSF 76
>AF016664-8|AAY44018.1| 397|Caenorhabditis elegans Hypothetical
protein D2062.12 protein.
Length = 397
Score = 28.7 bits (61), Expect = 5.3
Identities = 10/34 (29%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +3
Query: 216 LHLRHAN-IRESESTVRILADLQMNWIDKRLSWN 314
LH+ H + I++ + +++ W+D+RL WN
Sbjct: 62 LHVDHIHDIQDEQGVLKMALTFTFTWMDERLMWN 95
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 28.3 bits (60), Expect = 7.0
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 210 LTLHLRHANIRESESTVRILADLQMNWIDKRLSWN 314
L L+ + E + V ++ ++ W D RL+WN
Sbjct: 78 LLFSLKLVEVTEPQEKVSVVMEVMEYWFDARLTWN 112
>AL110477-13|CAB54337.2| 789|Caenorhabditis elegans Hypothetical
protein Y113G7B.23 protein.
Length = 789
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/67 (26%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Frame = +2
Query: 623 PPXPXGMXXXXXAPPXAXXXXPVGGGRP--RAXSXXXSPXRGXXPPXXSXXXXPPRVPXX 796
PP P G PP P GG P + P G PP P P
Sbjct: 681 PPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQP 740
Query: 797 PXPXRXP 817
P + P
Sbjct: 741 GHPYQQP 747
>AF230279-1|AAG16654.1| 789|Caenorhabditis elegans SWI3-like
protein protein.
Length = 789
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/67 (26%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Frame = +2
Query: 623 PPXPXGMXXXXXAPPXAXXXXPVGGGRP--RAXSXXXSPXRGXXPPXXSXXXXPPRVPXX 796
PP P G PP P GG P + P G PP P P
Sbjct: 681 PPPPQGQQYYGGPPPPGQPYGPPGGYPPQQQRPPYQAQPYPGPPPPQQQRGYGYPPPPQP 740
Query: 797 PXPXRXP 817
P + P
Sbjct: 741 GHPYQQP 747
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 28.3 bits (60), Expect = 7.0
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Frame = -1
Query: 460 PXDGAVPRYXGAEXVVPXXRX--QPRLAVPRQASTSVPRTPAKCCSPIPPAFQLS 302
P AVP A V+P QP+ P Q + S P+ P P P A + S
Sbjct: 450 PSRPAVPPVAPAPSVIPTSSQPSQPKQTQPAQPTPSAPKIPEGPAQPSPNAVKTS 504
>Z92837-3|CAB07402.3| 502|Caenorhabditis elegans Hypothetical
protein R03E1.3 protein.
Length = 502
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 204 VNLTLHLRHAN-IRESESTVRILADLQMNWIDKRLSWNA 317
VN+ L + H + E E T + + WID+ + W+A
Sbjct: 54 VNVFLSIAHVEKVDEHEQTALVHGHIWATWIDEYMQWDA 92
>AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical
protein C04C3.2 protein.
Length = 464
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Frame = +3
Query: 144 MIDSLLATYDRESPPDSK----IVVNLTLHLRH-ANIRESESTVRILADLQMNWIDKRLS 308
+I+++ YD+ P ++ ++V++T+ L +RE++ + W D +L+
Sbjct: 44 LIETIQRRYDKRVRPFAESNRPVIVHMTIVLGILTEVRENQQVASFVISHVQKWRDPKLA 103
Query: 309 WN 314
WN
Sbjct: 104 WN 105
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,769,560
Number of Sequences: 27780
Number of extensions: 234138
Number of successful extensions: 736
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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