Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_B05
         (1118 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    32   0.95 
03_02_0436 + 8427018-8427707,8429005-8429544                           30   3.8  
07_03_1136 + 24218601-24218734,24218769-24219906                       29   5.1  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   5.1  
02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060     29   5.1  
04_03_0660 + 18463011-18463322,18463424-18463516,18464500-184646...    29   6.7  
03_05_0501 - 24944533-24945507                                         29   8.8  

>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 31.9 bits (69), Expect = 0.95
 Identities = 17/49 (34%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
 Frame = +3

Query: 546  PPPPPXKKXKXFXXPPPXGG-GGGXXXXXXXXXXXXXXXPPPPXXXXXG 689
            PPPPP         PPP GG GG                PPPP     G
Sbjct: 1110 PPPPPPGGITGVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGGLG 1158


>03_02_0436 + 8427018-8427707,8429005-8429544
          Length = 409

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 16/43 (37%), Positives = 16/43 (37%)
 Frame = -1

Query: 614 PPPPPPXGGXXKXFXFFXGXGGGXXXXFFFFXXPXKXXXPPPP 486
           PPP  P  G         G GGG    FF    P     PPPP
Sbjct: 82  PPPAQPVHGAIHHHHNLGG-GGGQQSPFFPLLPPLPPQPPPPP 123


>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 15/42 (35%), Positives = 15/42 (35%)
 Frame = -2

Query: 670 GGGGXXXXXXXXXXXXXXXPPPPPXGGGXXKXXFFXXGGGGG 545
           GGGG               PP P  GGG         GGGGG
Sbjct: 113 GGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGG 154


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 546 PPPPPXKKXKXFXXPPPXGGGGG 614
           PPPPP  K      PPP GG  G
Sbjct: 353 PPPPPPPKGPSPPPPPPPGGKKG 375



 Score = 29.5 bits (63), Expect = 5.1
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +3

Query: 546 PPPPPXKKXKXFXXPPPXGGGGG 614
           PPPPP K       PPP G  GG
Sbjct: 354 PPPPPPKGPSPPPPPPPGGKKGG 376


>02_04_0180 + 20696258-20698398,20698691-20698871,20698998-20699060
          Length = 794

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 16/42 (38%), Positives = 16/42 (38%)
 Frame = +3

Query: 546 PPPPPXKKXKXFXXPPPXGGGGGXXXXXXXXXXXXXXXPPPP 671
           PPPPP         PPP G GGG               PPPP
Sbjct: 11  PPPPP---------PPPFGRGGGGAGYPRGHKQLYAPPPPPP 43


>04_03_0660 +
           18463011-18463322,18463424-18463516,18464500-18464607,
           18464892-18465044,18465256-18465354,18465443-18465571,
           18465987-18466166,18466208-18466246,18466247-18466363,
           18466445-18466609
          Length = 464

 Score = 29.1 bits (62), Expect = 6.7
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
 Frame = +3

Query: 546 PPPPPXKKXKXFXXPPP---XGGGGG 614
           PPPPP    +    PPP    GGGGG
Sbjct: 52  PPPPPPPPTQPAPPPPPPARSGGGGG 77


>03_05_0501 - 24944533-24945507
          Length = 324

 Score = 28.7 bits (61), Expect = 8.8
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 546 PPPPPXKKXKXFXXPPPXGGGGG 614
           PPPPP    +     P  GGGGG
Sbjct: 36  PPPPPKAPCRSQEEQPDGGGGGG 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.152    0.526 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,334,552
Number of Sequences: 37544
Number of extensions: 547359
Number of successful extensions: 6535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1480
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5608
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3374709644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)