Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP10_FL5_B01
(757 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 248 5e-67
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 244 1e-65
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 44 2e-05
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce... 29 0.95
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2... 27 2.9
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 26 5.0
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 25 8.8
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 25 8.8
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 248 bits (608), Expect = 5e-67
Identities = 118/181 (65%), Positives = 140/181 (77%)
Frame = +3
Query: 105 VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 284
VL ++D+ +LAA +H+G++N+ +ME YV+KRR+DG H+INL +TWEKLVLAAR +
Sbjct: 10 VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69
Query: 285 AIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLD 464
IENPADV VISSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+IV D
Sbjct: 70 TIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTD 129
Query: 465 PAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSIGLMWWLLAREXXXLX 644
P D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SIGL W+LLARE L
Sbjct: 130 PRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLR 189
Query: 645 G 647
G
Sbjct: 190 G 190
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 244 bits (596), Expect = 1e-65
Identities = 113/185 (61%), Positives = 142/185 (76%)
Frame = +3
Query: 93 GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 272
G ++L +ED+ ++LAA H+G++N+ +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5 GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64
Query: 273 RAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLL 452
R + IENPADV V+S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I +REPRL+
Sbjct: 65 RVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLI 124
Query: 453 IVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHSIGLMWWLLAREX 632
+V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SIGL+W+LLARE
Sbjct: 125 VVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREV 184
Query: 633 XXLXG 647
+ G
Sbjct: 185 LRVRG 189
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 44.0 bits (99), Expect = 2e-05
Identities = 46/190 (24%), Positives = 81/190 (42%), Gaps = 27/190 (14%)
Frame = +3
Query: 138 MLAATTHLGAENV--NFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENPADVF 311
+L++ HLG N + ++Y +R +G H+I+L +T L A V +I +
Sbjct: 53 LLSSGAHLGHSTSIWNPYTQPFIYGKR-EGIHIISLDQTMVYLRRAISVVRSIAKENGII 111
Query: 312 VISSRPFGQR-AVLKFAAHTGATPIAGRFTPGAFTN--QIQA------------------ 428
+ GQ+ +V+ A I R+ PG TN ++Q
Sbjct: 112 LFIGTRNGQKDSVVAAAKRARGYHIFDRWLPGLLTNAREVQGKLGGSILCKDNRGKLIQT 171
Query: 429 ----AFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLXFVDIAIPCNTKSSHS 596
++ P L+++L+P ++ EA ++P I + +TD+ V IP N S
Sbjct: 172 DKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRC 231
Query: 597 IGLMWWLLAR 626
L+ LL+R
Sbjct: 232 TDLIAGLLSR 241
>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 335
Score = 28.7 bits (61), Expect = 0.95
Identities = 14/59 (23%), Positives = 29/59 (49%)
Frame = +3
Query: 228 VINLRRTWEKLVLAARAVVAIENPADVFVISSRPFGQRAVLKFAAHTGATPIAGRFTPG 404
V+++R TW +LV+ + + + N ++ +I++ + V+ FA H PG
Sbjct: 89 VLSVRFTWNRLVVLIKGSIYVYNLKNMELINTLNTSKGNVIAFAVHENYVAYNSPTNPG 147
>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 474
Score = 27.1 bits (57), Expect = 2.9
Identities = 22/69 (31%), Positives = 31/69 (44%)
Frame = -3
Query: 491 SNGLMVLCRVQYNQETRFTECSLDLVSKSTWCETSRNRRSTGVRGKLQYSTLTEGP**DD 312
S GL L R + E F + +S + W T + + G+RG ++ EGP D
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP-SAD 225
Query: 311 EHISGVLDG 285
H SGV G
Sbjct: 226 LH-SGVFGG 233
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 26.2 bits (55), Expect = 5.0
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 5/84 (5%)
Frame = +3
Query: 363 HTGATPIAGRFTPGAFTNQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIAL 527
+ A P G T+ I A F+ +P + ++ D + T A + + L
Sbjct: 29 YVNAAPHLGHLYSLVLTDAI-ARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQL 87
Query: 528 CNTDSPLXFVDIAIPCNTKSSHSI 599
C+ +S F D+A+ NTK +H I
Sbjct: 88 CDRNSK-RFADLAVAANTKFTHFI 110
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/40 (30%), Positives = 24/40 (60%)
Frame = -1
Query: 601 PIEWEDLVLHGIAMSTNXSGESVLHKAITGMLTYEASVMG 482
PIE+E++ + G+ + SG++ LH+AI + + + G
Sbjct: 49 PIEFEEIDVTGMEKNNKSSGDA-LHEAIQSLKRNKVGLKG 87
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 25.4 bits (53), Expect = 8.8
Identities = 6/25 (24%), Positives = 17/25 (68%)
Frame = -2
Query: 312 RTHQRGSRWLRQHEQPEQVFPRYDA 238
R H++ + W ++HE+P+ + +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,115,767
Number of Sequences: 5004
Number of extensions: 66974
Number of successful extensions: 126
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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