Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP10_FL5_A12
         (850 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   118   9e-29
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   118   9e-29

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  118 bits (283), Expect = 9e-29
 Identities = 56/75 (74%), Positives = 65/75 (86%)
 Frame = +3

Query: 249 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 428
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 429 VRIPKGAGSPFILAW 473
           VRIPK  G  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score =  108 bits (260), Expect = 6e-26
 Identities = 50/67 (74%), Positives = 51/67 (76%)
 Frame = +1

Query: 445 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXX 624
           EQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF          
Sbjct: 66  EQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAA 125

Query: 625 XXTSLCF 645
             TSLCF
Sbjct: 126 GATSLCF 132



 Score = 81.0 bits (191), Expect = 1e-17
 Identities = 39/61 (63%), Positives = 45/61 (73%)
 Frame = +3

Query: 651 PLDFARTRLAADVGXGXGXREFSGLXNWISKIFXSXGLIGLYKRFGVSGQXIIXYRGP*F 830
           PLDFARTRLAADVG   G REF+GL N ++KIF + G+ GLY+ FGVS Q II YR   F
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYF 194

Query: 831 G 833
           G
Sbjct: 195 G 195


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  118 bits (283), Expect = 9e-29
 Identities = 56/75 (74%), Positives = 65/75 (86%)
 Frame = +3

Query: 249 MSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAF 428
           MS LADPVAFAKDFLAGG++AA+SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D F
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCF 60

Query: 429 VRIPKGAGSPFILAW 473
           VRIPK  G  F+  W
Sbjct: 61  VRIPKEQG--FLSYW 73



 Score =  108 bits (260), Expect = 6e-26
 Identities = 50/67 (74%), Positives = 51/67 (76%)
 Frame = +1

Query: 445 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXX 624
           EQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF          
Sbjct: 66  EQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYFVGNLASGGAA 125

Query: 625 XXTSLCF 645
             TSLCF
Sbjct: 126 GATSLCF 132



 Score = 81.0 bits (191), Expect = 1e-17
 Identities = 39/61 (63%), Positives = 45/61 (73%)
 Frame = +3

Query: 651 PLDFARTRLAADVGXGXGXREFSGLXNWISKIFXSXGLIGLYKRFGVSGQXIIXYRGP*F 830
           PLDFARTRLAADVG   G REF+GL N ++KIF + G+ GLY+ FGVS Q II YR   F
Sbjct: 135 PLDFARTRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYF 194

Query: 831 G 833
           G
Sbjct: 195 G 195


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,731
Number of Sequences: 438
Number of extensions: 4109
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27309825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)