Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_P18
         (773 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (gr...    28   8.5  
U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical pr...    28   8.5  
U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U40799-6|AAA81484.2|  210|Caenorhabditis elegans Ground-like (grd
           related) protein 4 protein.
          Length = 210

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 15/52 (28%), Positives = 15/52 (28%)
 Frame = -1

Query: 719 PXXXPXXPXXXPGXXXXXXXPXXPPPPAPPXXLXPXXXPAAXXXPXXXXAXA 564
           P   P  P   P           PPPP PP    P   P     P    A A
Sbjct: 42  PLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSPCQSYAPA 93


>U23515-9|AAP82644.1|  360|Caenorhabditis elegans Hypothetical
           protein R144.4a protein.
          Length = 360

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -1

Query: 650 PPPPAPPXXLXPXXXPAAXXXPXXXXAXAA 561
           PPPP PP    P   PAA   P    A  A
Sbjct: 2   PPPPPPPPPPPPPPPPAASAPPPSSNARNA 31


>U23515-8|AAP82645.1|  362|Caenorhabditis elegans Hypothetical
           protein R144.4b protein.
          Length = 362

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -1

Query: 650 PPPPAPPXXLXPXXXPAAXXXPXXXXAXAA 561
           PPPP PP    P   PAA   P    A  A
Sbjct: 2   PPPPPPPPPPPPPPPPAASAPPPSSNARNA 31


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,842,239
Number of Sequences: 27780
Number of extensions: 74934
Number of successful extensions: 1209
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)