Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_P11
(779 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 33 0.19
12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192 29 4.1
09_06_0240 + 21797458-21799369,21799636-21799784 29 4.1
08_01_1038 + 10540185-10540709 29 4.1
11_02_0104 + 8329231-8329902 29 5.5
11_02_0093 - 8238947-8239615 29 5.5
02_02_0310 - 8842286-8843314 29 5.5
01_05_0698 + 24376193-24376708 29 5.5
08_02_0964 - 23070624-23070860,23070970-23071250,23071353-23072124 28 7.2
12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583... 28 9.6
09_04_0619 - 19001350-19001359,19001737-19001800,19001955-190020... 28 9.6
06_03_1269 + 28865236-28865819,28866124-28866754 28 9.6
>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
Length = 863
Score = 33.5 bits (73), Expect = 0.19
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -3
Query: 441 PESCCVKKSILSTFAGNNCTVDAA 370
P SCCV+K I+S F NCT D A
Sbjct: 53 PASCCVRKIIVSNFLPLNCTKDEA 76
>12_01_0932 + 9253975-9254676,9254976-9255092,9255160-9255192
Length = 283
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = -3
Query: 411 LSTFAGNNCTVDAANPGCGPKI--GELYQKWNKPIAGVALGVACVEVVGALF 262
LST AG C + P CGP+ G Q+W + G VE++GALF
Sbjct: 111 LSTGAG--CAI-RPRPRCGPRARSGVAAQQWRHGRTVASEGRQSVELIGALF 159
>09_06_0240 + 21797458-21799369,21799636-21799784
Length = 686
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 411 LSTFAGNNCTVDAANPGCGPKIGELYQKWNK 319
++ N+C + A G G KI E+ Q WN+
Sbjct: 622 IAVLVKNHCANETAQDGLGFKIDEIVQAWNE 652
>08_01_1038 + 10540185-10540709
Length = 174
Score = 29.1 bits (62), Expect = 4.1
Identities = 22/57 (38%), Positives = 30/57 (52%)
Frame = +1
Query: 358 AAGIRGVDRAVVAGEGREDALLDATGLGQRELAVVDSASVTAAFELSLQFREDSLGG 528
+ G+ G + AVV EGR +++ G RE A + SASV A + RED GG
Sbjct: 104 SVGVVGEEAAVVRMEGRGGSVVADAG-SAREAAALASASVATA---AGSAREDDGGG 156
>11_02_0104 + 8329231-8329902
Length = 223
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 274 YHLNTSNTESNAGYRLVPFLVELADLGTAAGIRGV 378
+HLN S N GY V + AD GTAA G+
Sbjct: 63 FHLNASKYSGN-GYSTVCLKLHTADSGTAAAAGGI 96
>11_02_0093 - 8238947-8239615
Length = 222
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +1
Query: 274 YHLNTSNTESNAGYRLVPFLVELADLGTAAGIRGV 378
+HLN S N GY V + AD GTAA G+
Sbjct: 63 FHLNASKYSGN-GYSTVCLKLHAADSGTAAAAGGI 96
>02_02_0310 - 8842286-8843314
Length = 342
Score = 28.7 bits (61), Expect = 5.5
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 632 HHLHNDDHQQEXCVRDDHAVTLAYRSTASXERDHEHYSPDDYXNPRTD 775
HH H+D+++++ + D A R + R H H+ +D R +
Sbjct: 194 HHHHHDENEEDEHEQADEASPAVERLISFHRRRHHHHHHEDDHEQREE 241
>01_05_0698 + 24376193-24376708
Length = 171
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = -3
Query: 318 PIAGVALGVACVEVVGALFALCLANSIRNMDRRYA 214
P+AGV + A V V ALF CLA +R+ + A
Sbjct: 126 PVAGVLVMGADVAGVSALFGFCLAEYLRHNEAHAA 160
>08_02_0964 - 23070624-23070860,23070970-23071250,23071353-23072124
Length = 429
Score = 28.3 bits (60), Expect = 7.2
Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = -3
Query: 282 EVVGALFA-LCLANSIRNMDRRYA 214
E+ GA+FA +C NS++N+D R++
Sbjct: 334 EIHGAMFAAMCQKNSLKNLDSRFS 357
>12_02_0133 -
14057469-14057497,14057516-14057581,14057770-14058363,
14058450-14058570,14058926-14059320,14059410-14059534,
14059646-14059876,14060012-14060484,14060587-14060693,
14060842-14061172,14061222-14061250,14061345-14061901,
14062170-14062255,14062344-14062406,14062646-14063001,
14063101-14063356
Length = 1272
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +1
Query: 190 SSRDVFILGVPSVHVSYGIGEAQREQG-SYHLNTSNTESN 306
S RD ILG PSV S + +E+ + HL T +E N
Sbjct: 526 SDRDTSILGCPSVTASMTTQVSSKEESKAQHLTTGYSEVN 565
>09_04_0619 -
19001350-19001359,19001737-19001800,19001955-19002099,
19002434-19002917,19003175-19003260,19003417-19003484,
19003565-19003709,19004561-19004677
Length = 372
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 379 DRAVVAGEGREDALLDATGLGQRELAVVDSASVT 480
D G G+E+ L+ATG+ E+ + D+ +T
Sbjct: 28 DHFTPVGAGQEELGLEATGIESNEIKIADTTEMT 61
>06_03_1269 + 28865236-28865819,28866124-28866754
Length = 404
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -1
Query: 752 RRGCNVRDRVXGMLWSDTRESLHGRHVRN 666
RR C+V D V +W ++HGR R+
Sbjct: 214 RRRCSVFDVVTAAIWQCRTRAIHGRRCRS 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,754,720
Number of Sequences: 37544
Number of extensions: 374432
Number of successful extensions: 1306
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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