Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_P05
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch... 169 3e-43
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz... 169 3e-43
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc... 29 0.56
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 2.3
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 27 4.0
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar... 26 5.2
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 26 6.9
SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear t... 26 6.9
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 25 9.2
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 25 9.2
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa... 25 9.2
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 9.2
>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
L3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 169 bits (412), Expect = 3e-43
Identities = 85/152 (55%), Positives = 104/152 (68%)
Frame = -3
Query: 733 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGAKDTKVSLLVGTQRSYPVRHTKG 554
++ DKV+WAREH EK + + S F Q+EMID IGVT+G + + GT+R P + +G
Sbjct: 187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRG 245
Query: 553 LRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEY 374
LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K NAST++
Sbjct: 246 LRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDF 298
Query: 373 DLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
D +EK ITPMGGF YG V NDFVM G G
Sbjct: 299 DATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 9e-20
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -1
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 111 D 109
D
Sbjct: 386 D 386
>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 169 bits (412), Expect = 3e-43
Identities = 85/152 (55%), Positives = 104/152 (68%)
Frame = -3
Query: 733 TIEDKVKWAREHLEKPIPVDSVFAQDEMIDCIGVTQGAKDTKVSLLVGTQRSYPVRHTKG 554
++ DKV+WAREH EK + + S F Q+EMID IGVT+G + + GT+R P + +G
Sbjct: 187 SVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKR-LPRKTHRG 245
Query: 553 LRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEY 374
LRKVACIGAWHP+ V +TVARAG GY HRT++N KIYRIG G D K NAST++
Sbjct: 246 LRKVACIGAWHPANVQWTVARAGNAGYMHRTQLNSKIYRIGAG---DDAK----NASTDF 298
Query: 373 DLSEKSITPMGGFPHYGEVNNDFVMXQGLLHG 278
D +EK ITPMGGF YG V NDFVM G G
Sbjct: 299 DATEKRITPMGGFVRYGVVENDFVMLNGATPG 330
Score = 91.9 bits (218), Expect = 9e-20
Identities = 41/61 (67%), Positives = 49/61 (80%)
Frame = -1
Query: 291 GCCMGPKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKK 112
G GP KR++TLRKSL HT R ALE ++LK+IDT+SKFGHGRFQTPA+ F+GTLKK
Sbjct: 326 GATPGPVKRVLTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKK 385
Query: 111 D 109
D
Sbjct: 386 D 386
>SPBC685.09 |orc2|orp2|origin recognition complex subunit
Orc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.5 bits (63), Expect = 0.56
Identities = 18/67 (26%), Positives = 35/67 (52%)
Frame = +2
Query: 401 NFAILFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNAGNFPKTLGVSYGVA 580
NFA+L+ SL ++ +F++H +T + T+Y + + +N N K + + +
Sbjct: 377 NFALLWDTSLESSFNFVMHDATTFARYYNETTY--ENSLGIGRANVSN--KEKAIKHVLY 432
Query: 581 SLCANEK 601
SL AN +
Sbjct: 433 SLPANSR 439
>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 368 QIILSRCIVFNNFAILFVDSLSNTIDFLVHFSTVMITFLTS 490
++ L RC++ F +LF S S + FL S + I + +S
Sbjct: 109 ELSLFRCLLLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSS 149
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 130 HGYTQEGSYSRRSCGYHNPS 71
HGY+ + R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325
>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
S8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 200
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -1
Query: 708 PENIWRNLSLSILCLPKMK*LTALVSPKGQRIQRCH 601
P +W IL K K TA +PK + +QR H
Sbjct: 108 PFRVWYETHYGILMGSKGKKATATPTPKSKHVQRKH 143
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.8 bits (54), Expect = 6.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 353 NGFLRQIILSRCIVFNNFAI-LFVDSLSNTIDFLVHFSTVMITF 481
N FL + SRC V N+ I + V S ++F++ M+ +
Sbjct: 366 NSFLHNMGYSRCYVDENYHITIHVSSYERRVEFMLAVCEAMMLY 409
>SPAC15F9.03c |nxt2|nft2, ntf2, ntf2, nft2, SPAC1B9.01c|nuclear
transport factor Nxt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 623 PLGDTNAVNHFILGKHRIDRDRFLQMFSGPFHFV 724
P G T +V + G+ +D ++ Q +S FH V
Sbjct: 72 PTGTTGSVIVMVTGELLLDEEQMAQRYSQVFHLV 105
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 578 ASLCANEK*HLCILCPLGDTN-AVNHFI 658
A+ C N HL P DTN A NHFI
Sbjct: 246 ATFCVNSLAHLIGSQPFDDTNSARNHFI 273
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 715 KWAREHLEKPIPVDSVFAQDEMIDCIGV--TQGAKDTKVSLL 596
KW +E++ K +PVD A + V ++ AKD +SLL
Sbjct: 3 KWTKENVLKILPVDDESAAMITSTALAVDSSEAAKDYWISLL 44
>SPAC22F8.07c |rtf1||replication termination factor
Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 25.4 bits (53), Expect = 9.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +2
Query: 413 LFVDSLSNTIDFLVHFSTVMITFLTSTSYSERHPRRMPSSNA 538
LF+D LS D L+H ++ + T S H SNA
Sbjct: 421 LFIDGLSTFSDTLIHLHKMLNSSPEETYISNLHDSYTAFSNA 462
>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 478
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 609 FVSFAPWVTPMQSIISSWANTESTGIGFSRCSLAHFTLSSMV 734
FVS P V P+ II WA + ++ +T+S M+
Sbjct: 178 FVSIDPRVRPLGLIIKYWAKQRALCDAAGSGTITSYTISCML 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,395,636
Number of Sequences: 5004
Number of extensions: 73940
Number of successful extensions: 216
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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