Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_P04
         (788 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...   137   1e-32
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...   137   1e-32
06_03_0543 + 21967787-21970261                                         29   5.6  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     28   9.7  
07_01_0317 + 2229894-2230137,2231142-2231233,2231327-2231364,223...    28   9.7  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score =  137 bits (331), Expect = 1e-32
 Identities = 68/141 (48%), Positives = 88/141 (62%)
 Frame = -3

Query: 786 ENPADVXVXSSRPFGXACCXEVXRAHPVXRXLRDVSXPGAFTXPDPKLHSXEXRLLIVLD 607
           ENP D+ V S+RP+G     +  + +     +     PG FT       S E RLLI+ D
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQ-YTGAHAIAGRHTPGTFTNQLQTSFS-EPRLLILTD 130

Query: 606 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 427
           P  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K   SIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMR 190

Query: 426 GVLPRDQRWDVVVDLFFYRXP 364
           G +    +WDV+VDLFFYR P
Sbjct: 191 GTILPGHKWDVMVDLFFYRDP 211


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score =  137 bits (331), Expect = 1e-32
 Identities = 68/141 (48%), Positives = 89/141 (63%)
 Frame = -3

Query: 786 ENPADVXVXSSRPFGXACCXEVXRAHPVXRXLRDVSXPGAFTXPDPKLHSXEXRLLIVLD 607
           ENP D+ V S+RP+G     +  + +     +     PG FT       S E RLLI+ D
Sbjct: 73  ENPQDIIVQSARPYGQRAVLKFAQ-YTGAHAIAGRHTPGTFTNQLQTSFS-EPRLLILTD 130

Query: 606 PAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLLAREVLRLR 427
           P  DHQPI E++  NIP IA C+TDSP+R+VDI IP N K  +SIG ++WLLAR VL++R
Sbjct: 131 PRTDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMR 190

Query: 426 GVLPRDQRWDVVVDLFFYRXP 364
           G +    +WDV+VDLFFYR P
Sbjct: 191 GTILPGHKWDVMVDLFFYRDP 211


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 468 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 379
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 216 TRCSSCFWSTPCSRRMVCPGTR 151
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102



 Score = 27.9 bits (59), Expect = 9.7
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 216 TRCSSCFWSTPCSRRMVCPGTR*VE 142
           T C  C    P   + VCPG+R V+
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVK 299


>07_01_0317 +
           2229894-2230137,2231142-2231233,2231327-2231364,
           2231695-2231717,2232026-2232132,2232208-2232370,
           2232581-2232663,2232775-2232837,2233049-2233072,
           2233119-2233304
          Length = 340

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 392 WLICSSTVXPEESEKDEQQARE 327
           WLIC   V P    K+ +QARE
Sbjct: 284 WLICQGNVVPIPGAKNAEQARE 305


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,934,551
Number of Sequences: 37544
Number of extensions: 360448
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 844
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 866
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)