Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_P03
         (796 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical pr...    31   0.95 
Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical pr...    29   5.1  
Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical pr...    28   8.9  
AL032648-6|CAC35867.1|  244|Caenorhabditis elegans Hypothetical ...    28   8.9  
AF303259-1|AAG50217.1|  244|Caenorhabditis elegans 2O16 protein.       28   8.9  

>Z69302-8|CAA93261.3|  420|Caenorhabditis elegans Hypothetical
           protein F40F8.5 protein.
          Length = 420

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 417 PNPDHAGASHRRRPRHVLTDPSD 349
           PN DH G +H RR R+   DPSD
Sbjct: 242 PNVDHIGHNHHRRKRNHDDDPSD 264



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -2

Query: 417 PNPDHAGASHRRRPRHVLTDPSD 349
           PN DH G +HRR+  H   DPSD
Sbjct: 198 PNVDHTGHNHRRKRNHD-DDPSD 219



 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/23 (60%), Positives = 15/23 (65%)
 Frame = -2

Query: 417 PNPDHAGASHRRRPRHVLTDPSD 349
           PN DH G +HRRR R    DPSD
Sbjct: 287 PNVDHTGHNHRRR-RDQDDDPSD 308


>Z69885-2|CAC35825.1|  469|Caenorhabditis elegans Hypothetical
           protein T04C10.2b protein.
          Length = 469

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -2

Query: 549 RNVDLHDDLGLESIQKYMKSASERYFDKAMRHDN-RLIVAAADYSPN-PDHAGASHRRRP 376
           ++V+ + D GL   +K  +  S    D+ ++++  R I+    +  N P   GA  RR  
Sbjct: 110 QHVEDNRDQGLNIREKAKQITSLLSDDERLKNERTRFILTRNKFKQNNPGPVGAESRRSN 169

Query: 375 RHVLTDPS-DP 346
           RH +TD S DP
Sbjct: 170 RHHVTDASLDP 180


>Z69885-1|CAC35824.1|  467|Caenorhabditis elegans Hypothetical
           protein T04C10.2a protein.
          Length = 467

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = -2

Query: 549 RNVDLHDDLGLESIQKYMKSASERYFDKAMRHDN-RLIVAAADYSPN-PDHAGASHRRRP 376
           ++V+ + D GL   +K  +  S    D+ ++++  R I+    +  N P   GA  RR  
Sbjct: 110 QHVEDNRDQGLNIREKAKQITSLLSDDERLKNERTRFILTRNKFKQNNPGPVGAESRRSN 169

Query: 375 RHVLTDPS-DP 346
           RH +TD S DP
Sbjct: 170 RHHVTDASLDP 180


>Z78539-5|CAB01733.2| 1272|Caenorhabditis elegans Hypothetical
           protein C31E10.8 protein.
          Length = 1272

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 20/70 (28%), Positives = 32/70 (45%)
 Frame = -2

Query: 525 LGLESIQKYMKSASERYFDKAMRHDNRLIVAAADYSPNPDHAGASHRRRPRHVLTDPSDP 346
           +G E    ++ + +ERYFDK    D+ L  A AD           H +  +H+ +   D 
Sbjct: 484 VGPEDAFWFLIAVTERYFDKTY-FDSNLTGAQADQEVLKGLLEVQHPKIMKHLKSLDIDV 542

Query: 345 ITFALDAFSS 316
            +F L+ F S
Sbjct: 543 ASFTLNWFIS 552


>AL032648-6|CAC35867.1|  244|Caenorhabditis elegans Hypothetical
           protein Y54G9A.7 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -3

Query: 434 PPLTTPRILIMQEPVTVDALDTSLRIHQIQ*PLH*TPSALGAGLGTSV--TVLVELDKEF 261
           PPL TP   I+++ + + +L+   +I+     LH +P      + T +   +    +K F
Sbjct: 36  PPLVTPSTTIVEKSIELPSLENPQQIYTFP-TLHRSPIVAPGAILTEILEKLAPTAEKGF 94

Query: 260 AVQP-NP*ISSLSFSPDLL 207
            + P  P  S +  SP LL
Sbjct: 95  LIAPGTPNKSPMWLSPRLL 113


>AF303259-1|AAG50217.1|  244|Caenorhabditis elegans 2O16 protein.
          Length = 244

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
 Frame = -3

Query: 434 PPLTTPRILIMQEPVTVDALDTSLRIHQIQ*PLH*TPSALGAGLGTSV--TVLVELDKEF 261
           PPL TP   I+++ + + +L+   +I+     LH +P      + T +   +    +K F
Sbjct: 36  PPLVTPSTTIVEKSIELPSLENPQQIYTFP-TLHRSPIVAPGAILTEILEKLAPTAEKGF 94

Query: 260 AVQP-NP*ISSLSFSPDLL 207
            + P  P  S +  SP LL
Sbjct: 95  LIAPGTPNKSPMWLSPRLL 113


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,088,879
Number of Sequences: 27780
Number of extensions: 277811
Number of successful extensions: 723
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 700
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 723
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)