Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_P01
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 185 5e-48
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 32 0.11
SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p... 31 0.19
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 29 0.99
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 28 1.3
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo... 27 2.3
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 26 5.3
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 7.0
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ... 25 9.2
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 9.2
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 185 bits (451), Expect = 5e-48
Identities = 76/121 (62%), Positives = 105/121 (86%)
Frame = -1
Query: 614 IIKDSAVNAVXYGAKVLLPGILRYEDGIEVDQEIVIVTTKGEAVALAFALMTTSTMASCD 435
++KDSAVNA+ YGAK+++PG+LRYE GIEV++EIV++TTKGEA+A+ A M+T +++CD
Sbjct: 275 VVKDSAVNAICYGAKLMIPGLLRYEAGIEVNEEIVLITTKGEAIAVGIAQMSTVELSTCD 334
Query: 434 HGVAAKLKRVIMERDTYPRKWGLGPKASQKKILIQQGKLDKYGKPNENTPKEWLNSYVNY 255
HGV AK+KR IMERD YPR+WGLGP++ +KK L ++GKLDKYG+PNENTP +W SY++Y
Sbjct: 335 HGVVAKVKRCIMERDVYPRRWGLGPQSMKKKTLKKEGKLDKYGRPNENTPADWSKSYIDY 394
Query: 254 N 252
+
Sbjct: 395 S 395
Score = 39.1 bits (87), Expect = 7e-04
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = -3
Query: 717 DILDAQWXYETHKDETYXRRVIXXLKA 637
D+LDAQW Y+ +DE+Y RRVI L++
Sbjct: 240 DVLDAQWIYDNTRDESYLRRVIRPLES 266
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 31.9 bits (69), Expect = 0.11
Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Frame = -1
Query: 323 KLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 144
K D E++ +E +S + + ++E E+ + E +K+ + A +ED + E +
Sbjct: 32 KQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKK--AVAASEDSESDSESSE 89
Query: 143 EXXXXXXKRDSEAPAEADATMDT---SESPETAEQPADDSVR 27
E + DSE E+++ ++ SE +E+ +D+S R
Sbjct: 90 EEEETESEEDSEVSDESESESESESESEEESESEEESDESER 131
>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 184
Score = 31.1 bits (67), Expect = 0.19
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Frame = -1
Query: 635 PDCSQKDIIKDSAVNAVXYGAKVLLPGIL----RYEDGIEVDQEIVIVTTKGEAVALAFA 468
PD + + A+ + GA +++PG++ D IE DQ VIVT +G+ A
Sbjct: 92 PDAFTQVRVDRGAIKFLLSGANIMIPGLVSKGGNLPDDIEKDQ-YVIVTAEGKEAPAAIG 150
Query: 467 L--MTTSTMASCDHGV 426
L M+ M + G+
Sbjct: 151 LTKMSAKEMKETNKGI 166
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 28.7 bits (61), Expect = 0.99
Identities = 15/65 (23%), Positives = 29/65 (44%)
Frame = -1
Query: 236 ENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPET 57
E + VE+ K+ S+ ++ D + S + E DSE+ + ++ P +
Sbjct: 186 EEEEVVEKTEEKKEGSSESSSDSESSSDSSSESGDSDSSSDSESESSSEDEKKRKAEPAS 245
Query: 56 AEQPA 42
E+PA
Sbjct: 246 EERPA 250
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/45 (26%), Positives = 27/45 (60%)
Frame = -1
Query: 335 IQQGKLDKYGKPNENTPKEWLNSYVNYNVKKEPENGDGVEEGSRK 201
I QG+LD + KP ++PK+ +++ + K++ ++ G E ++
Sbjct: 336 IPQGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSNKGGESKKKR 380
>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 572
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 287 PKEWLNSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQ 144
PK + N+ N+KK +GD + R A+ A+A D +V KQ
Sbjct: 275 PKAFFNTDDEDNMKKSSSHGDSEVVEASDRYANQADAADAEVDNIEKQ 322
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 26.2 bits (55), Expect = 5.3
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 9/99 (9%)
Frame = -1
Query: 320 LDKYGKP--NENTPKEWLNSYVNYNV-------KKEPENGDGVEEGSRKRTASTANAEDP 168
+D+YG+P + KE Y N E + + V S K T S ++
Sbjct: 65 VDRYGRPLNQDKATKEIDRLYELENEGSSSSSESSEITDNEEVASASSKSTKSEELTDEE 124
Query: 167 DVSIEVKQEXXXXXXKRDSEAPAEADATMDTSESPETAE 51
EV SE+ E+DA +T PE +E
Sbjct: 125 SEDEEVYDPARGEGIISTSESSDESDAESETEAQPEISE 163
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 7.0
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = -1
Query: 245 KEPENGDGVEEGSRKRTASTANAEDPDVSIEVKQEXXXXXXKRDSEAPAEADA----TMD 78
KE E DG+++ S + + + E P+ ++++EA E A +
Sbjct: 282 KESETIDGIDDKSLRSSTREVSVESPNEDSVNDDSSSDVSDEKETEAKHEIRAPAIIVRE 341
Query: 77 TSESPETAEQPADDS 33
TS P TA +D+
Sbjct: 342 TSSHPSTAVPSENDT 356
>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = -1
Query: 272 NSYVNYNVKKEPENGDGVEEGSRKRTASTANAEDPDV 162
N YV+ N E +GD + E R R + ++ D+
Sbjct: 3 NEYVDMNSSSEDSDGDSILEEGRLRPSFRGQQKERDM 39
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 9.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Frame = -1
Query: 398 ERDTYPRKWGLGPKAS--QKKILIQQGKLDKYGKPNENTPKEWLNSYV 261
+R + + LG K S +ILI+Q + + E T +W N+YV
Sbjct: 540 DRPRHKKNPELGNKKSIFANEILIEQADAQSFKQDEEVTLMDWGNAYV 587
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,620,806
Number of Sequences: 5004
Number of extensions: 49374
Number of successful extensions: 152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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