Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_O24
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1128 + 34314866-34315294,34315365-34315440,34315548-343156...    31   1.4  
02_04_0203 - 20888010-20888162,20888242-20888469,20888969-208890...    29   4.3  
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238...    29   5.7  
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598...    29   5.7  
12_01_0302 - 2286171-2286341,2286747-2286968                           28   9.9  
02_02_0718 - 13290764-13290897,13292375-13293041,13293364-132937...    28   9.9  

>02_05_1128 +
           34314866-34315294,34315365-34315440,34315548-34315631,
           34315729-34315784,34316302-34316358,34316459-34316508,
           34316587-34316739,34316842-34316992,34317469-34317633
          Length = 406

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +1

Query: 70  ILRRLQRSRKKHGEDLPTGGRSRRKGEKLE*MQRGEQFCCP 192
           ++  L  SR++H  DL  GG   R+GEK    QRGE+   P
Sbjct: 76  VVGTLGESRREHTTDL-CGGGEERRGEKPRRRQRGERMPRP 115


>02_04_0203 -
           20888010-20888162,20888242-20888469,20888969-20889073,
           20889148-20889225,20889308-20889382,20890037-20890123,
           20890216-20890283,20890396-20890483,20890583-20890683,
           20890793-20890913,20891008-20891169,20891271-20891441
          Length = 478

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 16/36 (44%), Positives = 17/36 (47%)
 Frame = +2

Query: 482 ENKGAKPL*PCPVTRG*DTLMEPLDDNGGFXPARTP 589
           E K A+P  P PVT G      P DDN G  P   P
Sbjct: 384 EKKEAEPT-PVPVTVGAAVASSPADDNNGAAPQPEP 418


>09_04_0737 -
           19822822-19822973,19823069-19823135,19823666-19823822,
           19824003-19824177,19824364-19824481,19824676-19824874,
           19824983-19825062,19825141-19825257,19825791-19825961,
           19826121-19826597
          Length = 570

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/49 (36%), Positives = 25/49 (51%)
 Frame = +2

Query: 71  FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREESSFVVLKNRPDVVV 217
           F+VD  G G +  ++++LAV+ G R      CR     VV     DVVV
Sbjct: 93  FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140


>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
            30560292-30560346,30560537-30560613,30561228-30561315,
            30561490-30561593,30562050-30562231,30562347-30563109,
            30563195-30563438,30564513-30564658,30565158-30565283,
            30565404-30565517,30565595-30565762,30566283-30566528,
            30566605-30566767,30566970-30567064,30567274-30567357,
            30567769-30568055,30568359-30568572,30568923-30569140,
            30569386-30569623,30570312-30571118,30571202-30571301,
            30571694-30571737,30571824-30571973
          Length = 1942

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 20/65 (30%), Positives = 30/65 (46%)
 Frame = -2

Query: 238  PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 59
            P F T+LY     ++KD      S+     L S+  Y  L+DP   S D+    + +   
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407

Query: 58   ILHSF 44
            +LHSF
Sbjct: 1408 LLHSF 1412


>12_01_0302 - 2286171-2286341,2286747-2286968
          Length = 130

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 79  RLQRSRKKHGEDLPTGGRSRRKGEKLE 159
           RL+R RK +  D+   G  + +GEKLE
Sbjct: 57  RLERLRKGYARDVRAAGAMKVRGEKLE 83


>02_02_0718 -
           13290764-13290897,13292375-13293041,13293364-13293719,
           13294559-13294629,13295326-13295336
          Length = 412

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 439 IPRILRSPPPTHPLIEDVVMATNQAIIDYK 350
           +P++L+SPP T+  IED    +  + ID K
Sbjct: 382 LPQLLQSPPETYHAIEDGHNPSKTSFIDMK 411


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,972,470
Number of Sequences: 37544
Number of extensions: 393780
Number of successful extensions: 872
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)