Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_O13
         (790 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c...    31   0.19 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    28   1.8  
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   3.1  
SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr 2...    25   9.4  

>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 502

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
 Frame = -2

Query: 321 DVSEPSIRLEGSVGWASLG*AAPSGCSVDRGSPPTSSGFW-PRRGSDVG 178
           D   P   ++G   W S    AP    +  GS   +  FW P++GS +G
Sbjct: 165 DTQTPIATMKGHTNWVSCVAWAPDASIIATGSMDNTIRFWDPKKGSPIG 213


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/41 (34%), Positives = 16/41 (39%)
 Frame = -1

Query: 448 EWSDRSTVYRVPTRQAGSGPAGCSGTPAAPSGRPDGLPCRD 326
           EW      YR+P R+ G        T A PS      P RD
Sbjct: 488 EWESLEIAYRIPRRKPGQ--VAPQSTNAEPSNNQSNPPLRD 526


>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 117 QTAGPRISEPTHQTTPLHSYTRRP 188
           ++ G  ISE + Q+ P HSY  RP
Sbjct: 220 RSPGSNISEYSDQSPPYHSYRHRP 243


>SPBC800.13 |||histone H4 variant|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 479

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +3

Query: 180 RRPIPSEARTRMR*GGYRGQHYNQTARLTPRTPS--RRSLRGESK 308
           + P+PS A +      +  Q  +Q ++ TPR  S  RR+L+ ++K
Sbjct: 84  KNPVPSPAESESSERRHTPQTNSQKSQKTPRLSSNKRRTLKNDAK 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,030,024
Number of Sequences: 5004
Number of extensions: 36389
Number of successful extensions: 91
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)