Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_O04
(791 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 109 6e-25
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 107 2e-24
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 28 1.3
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch... 28 1.8
SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|... 27 4.1
SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyc... 27 4.1
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 25 9.4
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 109 bits (261), Expect = 6e-25
Identities = 58/129 (44%), Positives = 78/129 (60%), Gaps = 2/129 (1%)
Frame = -1
Query: 668 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 489
PGVE LAPGGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ +
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENII 284
Query: 488 ANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYAAVXEEESYLR 315
+N D+TRL+ SDEI+ +++A RV RA +K NPL N + +LNPYA + L
Sbjct: 285 SNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVKLN 344
Query: 314 AAQKEELEG 288
+ + G
Sbjct: 345 TGKTPKAAG 353
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 107 bits (257), Expect = 2e-24
Identities = 56/110 (50%), Positives = 73/110 (66%), Gaps = 2/110 (1%)
Frame = -1
Query: 668 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 489
PGVE LAPGGHLGRFVIWT+SAFG LD +FGS ++ KKN+ LP+ +
Sbjct: 225 PGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENII 284
Query: 488 ANTDLTRLLKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKLNPYA 345
+N D+TRL+ SDEI+ +++A RV RA +K NPL N + +LNPYA
Sbjct: 285 SNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYA 334
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/73 (26%), Positives = 36/73 (49%)
Frame = -1
Query: 527 KQKKNFNLPQPKMANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPY 348
KQK + + Q K LT+ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSPT 787
Query: 347 AAVXEEESYLRAA 309
+ +++ +++
Sbjct: 788 PQITVKQNTTKSS 800
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 28.3 bits (60), Expect = 1.3
Identities = 19/54 (35%), Positives = 33/54 (61%)
Frame = +3
Query: 345 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLEKTCEVSVGHLWLGQ 506
+V +EF+ RL IG+RV+ AF+GS E + L+ + +T + ++ L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258
>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 27.9 bits (59), Expect = 1.8
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 604 LDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 470
+D+ S+ LS H+ T +S R H ST PSQ + + SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342
>SPCC14G10.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 497
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -2
Query: 598 VSSSGLSPHSAGLTPYSGHGRHHRNK 521
VS S HS P+S GRH+R K
Sbjct: 120 VSRSSSIGHSGSTAPWSSVGRHNRKK 145
>SPAC9.13c |cwf16|SPAPJ735.01c|splicing factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 371 AMLKLNPYAAVXEEESYLRAAQKEELE 291
A+LK + Y ++ EEES R ++EE++
Sbjct: 180 ALLKEDAYGSIEEEESKKRKFEEEEID 206
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 9.4
Identities = 18/79 (22%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Frame = -1
Query: 518 KNFNLPQPKMANTDLTRLLKSDEIRKVLRAP----------NKRVIRATRKLNPL-TNNK 372
KNF + M+ ++ +L DE+R + R +K +I +++ + L N +
Sbjct: 136 KNFFEDESLMSTEEIIEILSLDELRSLARQTKVCGKSRSEISKEIIFLSKRQSVLHCNGQ 195
Query: 371 AMLKLNPYAAVXEEESYLR 315
L + + + ++ES+LR
Sbjct: 196 QFLSFDAFGVMHKQESFLR 214
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,457,598
Number of Sequences: 5004
Number of extensions: 44108
Number of successful extensions: 133
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -