Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_O04
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0578 + 4295386-4296489,4297394-4297507 122 4e-28
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 119 3e-27
03_02_0027 + 5100865-5100878,5102241-5102708,5102795-5103021,510... 31 1.0
11_01_0205 + 1617044-1617197,1617845-1618233 30 2.4
02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216 30 2.4
02_04_0073 - 19471254-19472681 29 4.2
08_02_0934 + 22747742-22748644 28 9.8
03_03_0125 - 14630078-14630136,14630197-14631160 28 9.8
03_03_0122 - 14617879-14618871 28 9.8
01_06_0160 - 27095727-27096008,27096164-27096652,27096983-270971... 28 9.8
>07_01_0578 + 4295386-4296489,4297394-4297507
Length = 405
Score = 122 bits (293), Expect = 4e-28
Identities = 58/122 (47%), Positives = 81/122 (66%)
Frame = -1
Query: 668 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 489
PGV+ LAPGGHLGRFVIWT+SAF +L+ ++G+++ PS +KK F LP+PKM
Sbjct: 230 PGVDVANVERLNLLDLAPGGHLGRFVIWTESAFKKLEEVYGTFEAPSLKKKGFILPRPKM 289
Query: 488 ANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVXEEESYLRAA 309
AN DL R++ SDE++ V++ NK V R ++ NPL N A+LKLNPY + + L A
Sbjct: 290 ANADLGRIINSDEVQSVVKPLNKEVKRREKRKNPLKNVAAVLKLNPYFGTARKMATLAEA 349
Query: 308 QK 303
+
Sbjct: 350 AR 351
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 119 bits (286), Expect = 3e-27
Identities = 58/122 (47%), Positives = 78/122 (63%)
Frame = -1
Query: 668 PGVEXXXXXXXXXXXLAPGGHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKM 489
PGV+ LAPGGHLGRFVIWT+ AF +LD ++G + TP+ +KK F LP+PKM
Sbjct: 229 PGVDVANVERLNLLDLAPGGHLGRFVIWTECAFKKLDEVYGGFDTPALKKKGFVLPRPKM 288
Query: 488 ANTDLTRLLKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNPYAAVXEEESYLRAA 309
AN DL+RL+ SDE++ V++ NK V + NPL N A+LKLNPY + + L A
Sbjct: 289 ANADLSRLINSDEVQSVVKPINKEVKLREARRNPLKNVAAVLKLNPYFGTARKMAALAEA 348
Query: 308 QK 303
+
Sbjct: 349 AR 350
>03_02_0027 +
5100865-5100878,5102241-5102708,5102795-5103021,
5103670-5104577
Length = 538
Score = 31.1 bits (67), Expect = 1.0
Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = -2
Query: 634 TS*SWLREVILDVSSSGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQ--RWPTLTSHVFS 461
+S S+LR + LD+SSS +P S+ H HH+ + S WP S
Sbjct: 376 SSSSFLRCLGLDMSSSSSAPPSSSGQQQQHHHHHHQETMQVPLPASSLPEWPPRLQPEPS 435
Query: 460 SLMRSGRSSVLPTNA 416
++ SG LP +A
Sbjct: 436 PMLSSGLGLGLPYDA 450
>11_01_0205 + 1617044-1617197,1617845-1618233
Length = 180
Score = 29.9 bits (64), Expect = 2.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 354 IEFQHRLVIGERVQFACSTDHAFVGSTEDL 443
++ HRLV G+ +F +H FV S ++L
Sbjct: 35 LQISHRLVAGQNYEFQSGINHGFVNSRKNL 64
>02_05_1166 - 34633770-34634301,34634559-34635181,34635279-34637216
Length = 1030
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = -1
Query: 620 APG--GHLGRFVIWTQSAFGRLDPLFGSWKTPSKQKKNFNLPQPKMANT 480
APG G GR+V+ SA LDP F SW S++ K F++ + A++
Sbjct: 670 APGVDGCSGRYVV-AASAGNALDPGFCSWDYYSREAKAFHIEEISHASS 717
>02_04_0073 - 19471254-19472681
Length = 475
Score = 29.1 bits (62), Expect = 4.2
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -2
Query: 580 SPHSAGLTPYSGHGRHHRNKR 518
+P G +P S HG HHR+++
Sbjct: 20 APRPRGASPLSSHGHHHRSRK 40
>08_02_0934 + 22747742-22748644
Length = 300
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = -2
Query: 577 PHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSHVFSSLMRSGRSSV-LPTNA*SVLH 401
P++A Y GH HHR T+ P S S SG S+ P N V
Sbjct: 152 PYAAAFAAYPGHHHHHR-FAATAAAAMPPPPHYPSWAAGSRYYSGPGSISQPINGSPVAP 210
Query: 400 AN*TRSPITRRC 365
A R P C
Sbjct: 211 AGMWRLPAAASC 222
>03_03_0125 - 14630078-14630136,14630197-14631160
Length = 340
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 602 GRFVIWTQSAFGRL-DPLFGSWK 537
G FV+W AFG L L G+WK
Sbjct: 127 GGFVVWADRAFGPLAGSLLGTWK 149
>03_03_0122 - 14617879-14618871
Length = 330
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = -1
Query: 602 GRFVIWTQSAFGRL-DPLFGSWK 537
G FV+W AFG L L G+WK
Sbjct: 124 GGFVVWADRAFGPLAGSLLGTWK 146
>01_06_0160 -
27095727-27096008,27096164-27096652,27096983-27097132,
27097656-27097920,27097995-27098274,27100311-27100388,
27100597-27101240,27101334-27101412,27101489-27101612,
27101782-27101882,27102870-27103068
Length = 896
Score = 27.9 bits (59), Expect = 9.8
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 570 ECGLSPDDETSKMTSRSQLQEVQ 638
+CG+ PD+ S++ S+ QEV+
Sbjct: 51 DCGMDPDEAVSRLLSQDTFQEVK 73
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,103,858
Number of Sequences: 37544
Number of extensions: 336808
Number of successful extensions: 862
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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