Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_O03
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   133   3e-32
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   129   4e-31
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    40   4e-04
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    28   1.3  
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   7.1  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  133 bits (321), Expect = 3e-32
 Identities = 63/98 (64%), Positives = 73/98 (74%)
 Frame = -2

Query: 648 NQIQAAFREPRLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSH 469
           N I   +REPRL++V DP  D Q I EAS+VNIPVIALC+TDS L  VDIAIP N K   
Sbjct: 112 NYITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRK 171

Query: 468 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 355
           SIGL+W+LLAREVLR+RG L R   WDV+ DL+FYR P
Sbjct: 172 SIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDP 209



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -1

Query: 724 RXVXXXXAHTXXTXXAGRFTPGAF 653
           R V    AHT  T  AGRFTPG F
Sbjct: 87  RAVLKFAAHTGATAIAGRFTPGNF 110


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  129 bits (312), Expect = 4e-31
 Identities = 62/98 (63%), Positives = 72/98 (73%)
 Frame = -2

Query: 648 NQIQAAFREPRLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSH 469
           N I   +REPRL+IV DP  D Q I EAS+VNIPVIALC+TDS L  VD+AIP N K   
Sbjct: 113 NYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYK 172

Query: 468 SIGLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRXP 355
           SIGL W+LLAREVLRLRG + R   W+V+ DL+FYR P
Sbjct: 173 SIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDP 210



 Score = 30.3 bits (65), Expect = 0.33
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = -1

Query: 724 RXVXXXXAHTXXTXXAGRFTPGAF 653
           R V    AHT  T  AGRFTPG F
Sbjct: 88  RAVLKFAAHTGATAIAGRFTPGNF 111


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 39.9 bits (89), Expect = 4e-04
 Identities = 19/62 (30%), Positives = 32/62 (51%)
 Frame = -2

Query: 621 PRLLIVFDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSIGLMWWLL 442
           P L+++ +P ++     EA   ++P I + +TD+  R V   IP N  S     L+  LL
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDDSLRCTDLIAGLL 239

Query: 441 AR 436
           +R
Sbjct: 240 SR 241


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 573 TEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 463
           T A    +  + LC+ +S  RF D+A+  NTK +H I
Sbjct: 75  TVAQTEGVSPLQLCDRNSK-RFADLAVAANTKFTHFI 110


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 419 VVCFPVTSAGMLWLICSSTVXPEESEKD 336
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 21/76 (27%), Positives = 32/76 (42%), Gaps = 4/76 (5%)
 Frame = +2

Query: 452 HIKPIEWEDLVLH-GIAMSTNLSGESVLHKAITGML--TYEASVMG*WSC-AGSNTIXRR 619
           H+       L+LH    ++T+ SG   +H AITG+L    E    G W+     NT+   
Sbjct: 348 HVPNFMITSLLLHKDRIITTSGSGTIQIHNAITGVLEARLEGHKEGVWAVKIHENTLVSG 407

Query: 620 GSRNAAWIWFIKSTWC 667
                  +W I+   C
Sbjct: 408 SIDKTVRVWNIEKAKC 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,673,884
Number of Sequences: 5004
Number of extensions: 49107
Number of successful extensions: 127
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)