Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_N24
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   140   3e-34
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   140   3e-34
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    28   1.8  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    27   3.1  
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   4.1  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 70/111 (63%), Positives = 81/111 (72%)
 Frame = -1

Query: 443 YRIGQGIHKKDGKVIKNNASTECDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 264
           YRIG G    D K    NAST+ D +EK ITPMGGF  YG V NDFVM+ G   GP KR+
Sbjct: 283 YRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRV 335

Query: 263 ITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
           +TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 336 LTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/65 (47%), Positives = 40/65 (61%)
 Frame = -2

Query: 751 IQXXRGTIEDKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 572
           IQ   G++ DKV+W REH EK + + S F Q+EMID I           T+RW TK+LPR
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR 240

Query: 571 KTXQG 557
           KT +G
Sbjct: 241 KTHRG 245



 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 28/46 (60%), Positives = 35/46 (76%)
 Frame = -3

Query: 594 GTQRSYPVRHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEM 457
           GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQL 278


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  140 bits (338), Expect = 3e-34
 Identities = 70/111 (63%), Positives = 81/111 (72%)
 Frame = -1

Query: 443 YRIGQGIHKKDGKVIKNNASTECDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRI 264
           YRIG G    D K    NAST+ D +EK ITPMGGF  YG V NDFVM+ G   GP KR+
Sbjct: 283 YRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNGATPGPVKRV 335

Query: 263 ITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 111
           +TLRKSL  HT R ALE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 336 LTLRKSLLTHTSRKALEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386



 Score = 66.9 bits (156), Expect = 3e-12
 Identities = 31/65 (47%), Positives = 40/65 (61%)
 Frame = -2

Query: 751 IQXXRGTIEDKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 572
           IQ   G++ DKV+W REH EK + + S F Q+EMID I           T+RW TK+LPR
Sbjct: 181 IQVNGGSVADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPR 240

Query: 571 KTXQG 557
           KT +G
Sbjct: 241 KTHRG 245



 Score = 62.9 bits (146), Expect = 5e-11
 Identities = 28/46 (60%), Positives = 35/46 (76%)
 Frame = -3

Query: 594 GTQRSYPVRHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEM 457
           GT+R  P +  + LRKVACIGAWHP+ V +TVARAG  GY HRT++
Sbjct: 234 GTKR-LPRKTHRGLRKVACIGAWHPANVQWTVARAGNAGYMHRTQL 278


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/56 (35%), Positives = 32/56 (57%)
 Frame = -2

Query: 175 SVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRENKHLTMQKKK 8
           SV+ +SR+R   +HS   +RR+   ++  L   Q+   AA    RE +HLT+ +KK
Sbjct: 2   SVVNESRKRRRLIHSEKETRRLDLGEEDDLELFQKE--AAWRRSREYEHLTVLEKK 55


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 199 NSLTPRPSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRL 86
           NS+ PR   +    R+ L  L +  HS+R  F  KL +
Sbjct: 614 NSINPRDKVIWHTRRKELAALKTGAHSQRCDFNYKLEI 651


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 132 HGYTQEGSYSRRSCGYHNPS 73
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,232,717
Number of Sequences: 5004
Number of extensions: 65565
Number of successful extensions: 155
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)