Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_N24
(791 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 139 3e-33
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 132 4e-31
12_02_1033 - 25552157-25552732,25553050-25553505,25553608-255536... 30 2.4
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 3.2
10_02_0192 + 6517985-6518348,6518647-6518699,6519984-6520021,652... 29 5.6
07_01_0761 + 5849466-5850677 28 9.8
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 139 bits (336), Expect = 3e-33
Identities = 63/91 (69%), Positives = 72/91 (79%)
Frame = -1
Query: 389 ASTECDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 210
A TE D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
Query: 209 INLKFIDTSSKFGHGRFQTPADKAAFMGTLK 117
I LKFIDTSSKFGHGRFQT +K F G LK
Sbjct: 358 IKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
Score = 74.5 bits (175), Expect = 9e-14
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = -3
Query: 576 PVRHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQE 448
P + + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEM ++
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Score = 59.7 bits (138), Expect = 3e-09
Identities = 30/65 (46%), Positives = 37/65 (56%)
Frame = -2
Query: 751 IQXXRGTIEDKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 572
IQ GTI DKV + + EK IPVD+VF +DEMID I +RW +LPR
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 571 KTXQG 557
KT +G
Sbjct: 244 KTHRG 248
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 132 bits (318), Expect = 4e-31
Identities = 59/83 (71%), Positives = 68/83 (81%)
Frame = -1
Query: 389 ASTECDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEK 210
A TE D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+
Sbjct: 298 ACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEE 357
Query: 209 INLKFIDTSSKFGHGRFQTPADK 141
I LKFIDTSSKFGHGRFQT +K
Sbjct: 358 IKLKFIDTSSKFGHGRFQTTDEK 380
Score = 74.5 bits (175), Expect = 9e-14
Identities = 31/43 (72%), Positives = 37/43 (86%)
Frame = -3
Query: 576 PVRHXKXLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMXQE 448
P + + LRKVACIGAWHP+RVS+TVARAGQ GYHHRTEM ++
Sbjct: 242 PRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKK 284
Score = 59.7 bits (138), Expect = 3e-09
Identities = 30/65 (46%), Positives = 37/65 (56%)
Frame = -2
Query: 751 IQXXRGTIEDKVKWXREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXTSRWHTKKLPR 572
IQ GTI DKV + + EK IPVD+VF +DEMID I +RW +LPR
Sbjct: 184 IQINGGTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPR 243
Query: 571 KTXQG 557
KT +G
Sbjct: 244 KTHRG 248
>12_02_1033 -
25552157-25552732,25553050-25553505,25553608-25553659,
25553758-25553831,25553968-25554017,25554106-25554187,
25554265-25554314,25554405-25554447,25554544-25554624,
25554723-25554768,25554860-25554906,25554998-25555063,
25555334-25555400,25555528-25555613
Length = 591
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = -2
Query: 181 PSSVMVDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 38
PS V+ +RRR+ R +S + R + F+K P P+R ++ ++E
Sbjct: 292 PSDVVDSARRRMARRNSLGNERTVTFSK----PSPERNSVSSTRSIKE 335
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 3.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 374 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 279
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>10_02_0192 +
6517985-6518348,6518647-6518699,6519984-6520021,
6522332-6522717,6523752-6523822,6524620-6524732,
6525019-6525337,6525576-6525886,6526493-6527069,
6530483-6530538,6531643-6532126
Length = 923
Score = 28.7 bits (61), Expect = 5.6
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = -2
Query: 166 VDSRRRLTRLHSWVHSRRIVFAKKLRLPQPQRGCCAALSVVRE 38
V S RL RL W + + LRL P+R C A+ VV E
Sbjct: 11 VSSWPRLPRLPPWPCASHAQRRRVLRLLPPRRRCAGAVRVVAE 53
>07_01_0761 + 5849466-5850677
Length = 403
Score = 27.9 bits (59), Expect = 9.8
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Frame = -3
Query: 609 VSLLVGTQRSYPVRHXKXLRKVACI--GAWHPSRVSFTVARAGQKGYHHR 466
V+LLVG R V V+ + G HP SFT+ RA H+
Sbjct: 129 VALLVGNDRRLRVLDAAASAAVSLVPDGEHHPINCSFTLGRAASSSGEHK 178
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,829,067
Number of Sequences: 37544
Number of extensions: 460797
Number of successful extensions: 1068
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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