Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_N22
(803 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC320.10 |srp72||signal recognition particle subunit Srp72|Sch... 29 0.58
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 28 1.4
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 2.4
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 27 3.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.1
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ... 23 4.9
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 5.5
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 7.2
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 25 9.5
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb... 25 9.5
>SPCC320.10 |srp72||signal recognition particle subunit
Srp72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 561
Score = 29.5 bits (63), Expect = 0.58
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -3
Query: 330 PPNADLSKPPDPERWLPKYERT 265
P + + PDP+RW+PK +RT
Sbjct: 524 PKSFNPKATPDPQRWIPKRDRT 545
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/47 (31%), Positives = 21/47 (44%)
Frame = -1
Query: 263 RTESDEALDVTSSRVAKECPPLPRINMT*VNSRPRLAPATSAKSPRV 123
RT S ++S PP+P + T N P P+ +KSP V
Sbjct: 355 RTPSGSLTPLSSRPAHTSLPPIPTVQTTSSNVPPVNRPSLKSKSPSV 401
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 213 GMSTTATDQYDMSKQQTTPSPGDLCQESPG 124
G S T D D SK T P+PG +PG
Sbjct: 944 GFSETNWDTEDNSKPYTAPTPGAWAAPTPG 973
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +2
Query: 206 DIPWLPLMTSRLMPRRFLYAVRSYFGNHLSGSGG 307
D+PW P SR+ + A RS FG +++ G
Sbjct: 140 DLPWTPTQLSRIARQGSGSACRSLFGGYVAWEMG 173
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 1/62 (1%)
Frame = +3
Query: 585 PAPFPRXQXXPXXXXXPXXPPTXXPXLXGAXXPGPVXXXXXXSXPASN-XLXXXSAXPXP 761
PAP P P P PP P + GA P P S S A P P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPP--PGVAGAGPPPPPPPPPAVSAGGSRYYAPAPQAEPEP 803
Query: 762 KI 767
KI
Sbjct: 804 KI 805
>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1429
Score = 23.0 bits (47), Expect(2) = 4.9
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -3
Query: 492 ETKSILTALESSKWMMGAKVVKKTVQSKQEQS 397
ET S L WM+ + K+V + EQS
Sbjct: 268 ETMSWFNTLLQRFWMLNEPEISKSVSTSVEQS 299
Score = 21.4 bits (43), Expect(2) = 4.9
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -3
Query: 282 PKYERTAYRKRRGIRRDVIKGSQGMSTTATDQYDMS 175
P+ +R R + RDV+ S T D YD++
Sbjct: 323 PRIDRV--RTHPPVERDVVLMDVDFSLTPNDNYDVN 356
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 5.5
Identities = 20/72 (27%), Positives = 31/72 (43%)
Frame = -3
Query: 294 ERWLPKYERTAYRKRRGIRRDVIKGSQGMSTTATDQYDMSKQQTTPSPGDLCQESPGRSQ 115
E+ K ER RK++ + KGS G T A+ + +TP+ D + G+
Sbjct: 182 EKEREKKEREKLRKKQQQAKK--KGSTGEDTLASSEVSSEVDISTPAEND--SSAKGKQA 237
Query: 114 ADRERLAAQATA 79
A +R TA
Sbjct: 238 AGSKRKGPNVTA 249
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 195 TDQYDMSKQQTTPSPGDLCQESPGRSQADRERLAAQATAEEERQ 64
T +Y+M +Q CQ+ P D RL QA EEE++
Sbjct: 1198 TKEYEMRAEQIRNDYAAKCQDEP--IPDDEARLFMQAQREEEQR 1239
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 9.5
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 148 RPLPRVPGSKSSRPRALGSASNSRRRKARDVNGSST 41
+ +PR K +RPR S ++ RR +R ++ S+
Sbjct: 253 KSIPRPLSHKLTRPRVTASGNSRRRPLSRSIHSLSS 288
>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 251
Score = 25.4 bits (53), Expect = 9.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -3
Query: 300 DPERWLPKYERTAYRKRRGIRRDVIKGSQGMSTTATDQYDMS 175
DPE L Y + R R ++G+ +STT+ DQ ++
Sbjct: 88 DPETLLVSYFLKSPRMGEFHRESFVEGALNLSTTSLDQLKLA 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,749
Number of Sequences: 5004
Number of extensions: 34729
Number of successful extensions: 120
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -