Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP09_T7_N22
(803 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1613 + 38643833-38643974,38644054-38644190,38644828-386452... 52 5e-07
03_02_0985 - 12961787-12961984,12963177-12963337,12965332-129654... 32 0.61
03_06_0212 + 32400982-32402055 31 0.81
01_05_0407 - 21883009-21883950 31 1.4
09_04_0078 + 14379720-14379786,14379903-14379974,14381093-143814... 29 3.3
04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798 29 3.3
02_05_0101 - 25824093-25824112,25824734-25824842,25824927-258264... 29 4.3
08_01_0343 - 3025577-3025810,3026428-3026505,3026630-3026748,302... 28 10.0
03_02_0502 - 8934646-8934834,8934974-8935121,8935228-8935304,893... 28 10.0
>01_06_1613 +
38643833-38643974,38644054-38644190,38644828-38645207,
38645487-38645583,38645685-38645972,38646683-38647648
Length = 669
Score = 52.0 bits (119), Expect = 5e-07
Identities = 30/79 (37%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Frame = -3
Query: 321 ADLSKPPDPERWLPKYERTAYRKRRGIRRDVIKGSQGM----STTATDQYDMSK-QQTTP 157
A+ PPDPERWLPK ER++YR +R +R ++G+QG T++ SK Q T
Sbjct: 589 ANPGPPPDPERWLPKRERSSYRPKRKDKRAQVRGAQGAVSRDGTSSASASSSSKANQATK 648
Query: 156 SPGDLCQESPGRSQADRER 100
+P E P S R++
Sbjct: 649 APA-AAPEPPKGSNKSRKK 666
>03_02_0985 -
12961787-12961984,12963177-12963337,12965332-12965489,
12966015-12966105,12966715-12966752,12966994-12967154,
12967249-12968687,12968815-12969227,12969630-12970987,
12971089-12971454,12971533-12971696,12971748-12971820,
12972967-12973113
Length = 1588
Score = 31.9 bits (69), Expect = 0.61
Identities = 21/91 (23%), Positives = 35/91 (38%), Gaps = 1/91 (1%)
Frame = -3
Query: 327 PNADLSKPPDPERWLPKYERTAYRKRRGIRRDVIKGSQGMSTTATDQYDMSKQQTTPSPG 148
P S PP P+ P R ++ Q ST A + + T PS G
Sbjct: 95 PTYQRSPPPLPQSRSPPKVANVGTSRSPYQQSAESMGQYPSTVANESISRNNGSTAPSSG 154
Query: 147 DLC-QESPGRSQADRERLAAQATAEEERQGT 58
DLC +E + +++ +A + + G+
Sbjct: 155 DLCKREICSSTNGEKDSVACSDSLDSSFNGS 185
>03_06_0212 + 32400982-32402055
Length = 357
Score = 31.5 bits (68), Expect = 0.81
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = -1
Query: 404 NNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSS 225
+ LP L ++ A A RR+Q K GC STSE SD+ + V S+
Sbjct: 108 DTLPSLDPAAFAAIPHAAADAAPTRRRSQQQQQQLSNKSGCSSTSETSKGSDKEVTVASA 167
>01_05_0407 - 21883009-21883950
Length = 313
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -2
Query: 151 RRPLPRVPGSKSSRPRALGSASNSRRRKARDVNGSS 44
R+PLP S + R G++S++RRR A GSS
Sbjct: 54 RKPLPSSSSSSKAARRERGASSSTRRRSAPGDEGSS 89
Score = 27.9 bits (59), Expect = 10.0
Identities = 27/101 (26%), Positives = 39/101 (38%)
Frame = -1
Query: 410 SRNNLPELPALSWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVT 231
SR LP + S RR+R AS+ S R +++P GG +S + A
Sbjct: 53 SRKPLPSSSSSSKAARRERGASS---STRRRSAPGDEGSSGGVGGSSAKAAATAAAAAAA 109
Query: 230 SSRVAKECPPLPRINMT*VNSRPRLAPATSAKSPRVEVKQT 108
++ A E P P N R A +A + V T
Sbjct: 110 TATTAAEVSPTPSDVAAKANGRVGETQAAAAAAEGAAVPVT 150
>09_04_0078 +
14379720-14379786,14379903-14379974,14381093-14381497,
14382835-14382911,14383016-14383135,14383227-14383997,
14384933-14385146,14385269-14385735
Length = 730
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = -1
Query: 380 LSWDRRRKRNASATANSR-RTQTSPNLPIR-KGGCQSTSELRTESDEALDVTSSRVAKEC 207
+ WD RR++ AS N+R R + N P R +GG ++ S++ ++ + T V E
Sbjct: 37 MGWDNRRRKQASTIMNARGRGARNGNGPNRGRGGGRAHSDVVVGANTTVLATRRWVGLEI 96
Query: 206 PPLP 195
+P
Sbjct: 97 DSVP 100
>04_04_0612 + 26611743-26611878,26612211-26612340,26613243-26613798
Length = 273
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 153 PGDLCQESPGRSQADRERLAAQATAEEERQG 61
P D+ SP RS+ +ER+AA A E G
Sbjct: 130 PADVVTGSPNRSETGQERVAADRPASSESSG 160
>02_05_0101 -
25824093-25824112,25824734-25824842,25824927-25826429,
25826596-25827333,25827712-25827919,25828455-25830409,
25830868-25830960,25831044-25831100,25831189-25831272,
25831345-25831437,25831622-25832053,25833593-25833933,
25834663-25835215
Length = 2061
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/62 (29%), Positives = 21/62 (33%)
Frame = -1
Query: 377 SWDRRRKRNASATANSRRTQTSPNLPIRKGGCQSTSELRTESDEALDVTSSRVAKECPPL 198
SW RRR R SRR + GGC + R E V V P+
Sbjct: 126 SWRRRRSRTRQRRRRSRRRRRRRRTCGGGGGCGRGGDARGRPTELAKVVDGAVTPSLVPV 185
Query: 197 PR 192
R
Sbjct: 186 DR 187
>08_01_0343 -
3025577-3025810,3026428-3026505,3026630-3026748,
3027566-3027645,3028034-3028107,3028536-3028620,
3028704-3028789,3028968-3029038,3029126-3029207,
3029490-3029531,3029552-3029584,3029699-3029794,
3030163-3030414,3030970-3031149,3032079-3032119,
3032341-3032470,3032504-3032606,3032686-3032773,
3033151-3033304,3033688-3033739,3033815-3033894,
3034478-3034789,3034886-3034955,3035033-3035100,
3035405-3035678,3036408-3036580,3037036-3037128,
3037228-3037443
Length = 1121
Score = 27.9 bits (59), Expect = 10.0
Identities = 18/63 (28%), Positives = 30/63 (47%)
Frame = -3
Query: 279 KYERTAYRKRRGIRRDVIKGSQGMSTTATDQYDMSKQQTTPSPGDLCQESPGRSQADRER 100
+Y+ RKR G D G S + + +YD+S + S D ++ R ++ + R
Sbjct: 337 RYKPPHLRKRGGKGNDSFDGRN--SDSESSRYDLSSSDSDMSDSDGYAKTGDRFRSSKAR 394
Query: 99 LAA 91
LAA
Sbjct: 395 LAA 397
>03_02_0502 -
8934646-8934834,8934974-8935121,8935228-8935304,
8935427-8935497,8935594-8935680,8935852-8936316,
8936406-8936880
Length = 503
Score = 27.9 bits (59), Expect = 10.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 306 PPDPERWLPKYERTAYRKRRGIRRDVIKGSQGMSTT 199
PP P +++P E +A+ K + DV+ ++ + TT
Sbjct: 25 PPTPPQYVPPEEPSAFAKLYAVAGDVVGRAKALLTT 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,002,531
Number of Sequences: 37544
Number of extensions: 307355
Number of successful extensions: 1179
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1044
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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