Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP09_T7_N15
         (797 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo...   115   9e-27
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo...   114   2e-26
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    29   1.0  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    28   1.8  
SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|ch...    27   4.1  
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni...    25   9.5  

>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  115 bits (276), Expect = 9e-27
 Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
 Frame = -1

Query: 740 FQXDSGXXXAFRNIPGVEXXXXXXXXXXXLAPGGHFGRXVXWTQSAFGRLDPLFGSWKTP 561
           F  D+G   AFRNIPGVE           LAPGGH GR V WT+SAFG LD +FGS    
Sbjct: 211 FNEDAGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEA 270

Query: 560 SKQKKNFNLPQPKMANTDLTRLXKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKL 387
           ++ KKN+ LP+  ++N D+TRL  SDEI+ +++A    RV RA  +K NPL N   + +L
Sbjct: 271 AQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARL 330

Query: 386 NPY 378
           NPY
Sbjct: 331 NPY 333


>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
           L2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score =  114 bits (274), Expect = 2e-26
 Identities = 60/123 (48%), Positives = 77/123 (62%), Gaps = 2/123 (1%)
 Frame = -1

Query: 740 FQXDSGXXXAFRNIPGVEXXXXXXXXXXXLAPGGHFGRXVXWTQSAFGRLDPLFGSWKTP 561
           F  D+G   AFRNIPGVE           LAPGGH GR V WT+SAFG LD +FGS    
Sbjct: 211 FNEDTGIVKAFRNIPGVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEV 270

Query: 560 SKQKKNFNLPQPKMANTDLTRLXKSDEIRKVLRAPN-KRVIRA-TRKLNPLTNNKAMLKL 387
           ++ KKN+ LP+  ++N D+TRL  SDEI+ +++A    RV RA  +K NPL N   + +L
Sbjct: 271 AQLKKNYFLPENIISNADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRL 330

Query: 386 NPY 378
           NPY
Sbjct: 331 NPY 333


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/54 (35%), Positives = 33/54 (61%)
 Frame = +3

Query: 375 RVRIEFQHRLVIGERVQFACSTDHAFVGSTEDLPDLIRLXKTCEVSVGHLWLGQ 536
           +V +EF+ RL IG+RV+       AF+GS E +  L+ + +T + ++  L LG+
Sbjct: 207 QVAVEFRKRLNIGDRVKDGLLYKDAFLGS-EAVDVLMHIVRTTDRNLA-LLLGR 258


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -1

Query: 557 KQKKNFNLPQPKMANTDLTRLXKSDEIRKVLRAPNKRVIRATRKLNPLTNNKAMLKLNP 381
           KQK + +  Q K     LT+   S E + VL       +R T+K   LTN+  ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786


>SPBC902.06 |mto2||MT organizer Mto2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = -2

Query: 634 LDVXSXGLSPHSAGLTPYSGHGRHHRNKRRTSTCPSQRWPTLTSH 500
           +D+ S  LS H+   T +S   R H      ST PSQ + +  SH
Sbjct: 299 VDLQSNELSHHNVRTTLFSDDSRFHSKIHTHSTPPSQMY-SAASH 342


>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
           8|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = -1

Query: 575 SWKTPSKQKKNFNLPQPKMANTDLTRLXKSDEIRKVLRAPNKRVIRATRKLNPL 414
           S+++  KQKK  +  + + +  ++ RL +  E+R  +   NK+ +    KL  L
Sbjct: 169 SFQSRLKQKKQRS--EFRASKREMERLERDQELRNKIEERNKKELETIEKLREL 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,223,973
Number of Sequences: 5004
Number of extensions: 37518
Number of successful extensions: 84
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)